Experiment: marine broth 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07610 and PGA1_c07620 are separated by 114 nucleotides PGA1_c07620 and PGA1_c07630 are separated by 169 nucleotides PGA1_c07630 and PGA1_c07640 are separated by 67 nucleotides
PGA1_c07610: PGA1_c07610 - 4-hydroxyphenylpyruvate dioxygenase Hpd, at 786,673 to 787,773
_c07610
PGA1_c07620: PGA1_c07620 - Type IV pilus biogenesis., at 787,888 to 790,587
_c07620
PGA1_c07630: PGA1_c07630 - Uncharacterized conserved protein, at 790,757 to 791,473
_c07630
PGA1_c07640: PGA1_c07640 - O-acetylhomoserine / O-acetylserine sulfhydrylase, at 791,541 to 792,833
_c07640
Position (kb) 787
788
789
790
791 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 787.037 kb on - strand, within PGA1_c07610 at 787.102 kb on - strand, within PGA1_c07610 at 787.127 kb on + strand, within PGA1_c07610 at 787.127 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.144 kb on - strand, within PGA1_c07610 at 787.144 kb on - strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.165 kb on - strand, within PGA1_c07610 at 787.174 kb on + strand, within PGA1_c07610 at 787.182 kb on - strand, within PGA1_c07610 at 787.182 kb on - strand, within PGA1_c07610 at 787.189 kb on - strand, within PGA1_c07610 at 787.293 kb on + strand, within PGA1_c07610 at 787.296 kb on - strand, within PGA1_c07610 at 787.303 kb on - strand, within PGA1_c07610 at 787.303 kb on - strand, within PGA1_c07610 at 787.313 kb on - strand, within PGA1_c07610 at 787.365 kb on + strand, within PGA1_c07610 at 787.400 kb on + strand, within PGA1_c07610 at 787.496 kb on + strand, within PGA1_c07610 at 787.504 kb on - strand, within PGA1_c07610 at 787.507 kb on - strand, within PGA1_c07610 at 787.510 kb on + strand, within PGA1_c07610 at 787.518 kb on - strand, within PGA1_c07610 at 787.578 kb on + strand, within PGA1_c07610 at 787.591 kb on + strand, within PGA1_c07610 at 787.671 kb on + strand at 787.679 kb on - strand at 787.679 kb on - strand at 787.686 kb on - strand at 787.758 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.785 kb on - strand at 787.785 kb on - strand at 787.785 kb on - strand at 787.785 kb on - strand at 787.879 kb on + strand at 787.879 kb on + strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.922 kb on - strand at 787.956 kb on - strand at 787.999 kb on - strand at 788.051 kb on + strand at 788.078 kb on - strand at 788.098 kb on + strand at 788.120 kb on + strand at 788.153 kb on - strand at 788.153 kb on - strand at 788.153 kb on - strand at 788.153 kb on - strand at 788.178 kb on + strand, within PGA1_c07620 at 788.218 kb on - strand, within PGA1_c07620 at 788.225 kb on + strand, within PGA1_c07620 at 788.228 kb on - strand, within PGA1_c07620 at 788.228 kb on - strand, within PGA1_c07620 at 788.263 kb on + strand, within PGA1_c07620 at 788.263 kb on + strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.273 kb on - strand, within PGA1_c07620 at 788.381 kb on + strand, within PGA1_c07620 at 788.505 kb on + strand, within PGA1_c07620 at 788.506 kb on + strand, within PGA1_c07620 at 788.588 kb on + strand, within PGA1_c07620 at 788.596 kb on - strand, within PGA1_c07620 at 788.596 kb on - strand, within PGA1_c07620 at 788.633 kb on + strand, within PGA1_c07620 at 788.634 kb on + strand, within PGA1_c07620 at 788.634 kb on + strand, within PGA1_c07620 at 788.641 kb on - strand, within PGA1_c07620 at 788.642 kb on - strand, within PGA1_c07620 at 788.738 kb on + strand, within PGA1_c07620 at 788.746 kb on - strand, within PGA1_c07620 at 788.762 kb on + strand, within PGA1_c07620 at 788.780 kb on - strand, within PGA1_c07620 at 788.823 kb on - strand, within PGA1_c07620 at 788.829 kb on + strand, within PGA1_c07620 at 788.845 kb on - strand, within PGA1_c07620 at 788.895 kb on + strand, within PGA1_c07620 at 788.914 kb on + strand, within PGA1_c07620 at 788.914 kb on + strand, within PGA1_c07620 at 788.969 kb on + strand, within PGA1_c07620 at 788.997 kb on - strand, within PGA1_c07620 at 789.092 kb on + strand, within PGA1_c07620 at 789.119 kb on - strand, within PGA1_c07620 at 789.129 kb on + strand, within PGA1_c07620 at 789.129 kb on + strand, within PGA1_c07620 at 789.147 kb on - strand, within PGA1_c07620 at 789.203 kb on - strand, within PGA1_c07620 at 789.205 kb on + strand, within PGA1_c07620 at 789.303 kb on + strand, within PGA1_c07620 at 789.310 kb on + strand, within PGA1_c07620 at 789.372 kb on - strand, within PGA1_c07620 at 789.393 kb on - strand, within PGA1_c07620 at 789.393 kb on - strand, within PGA1_c07620 at 789.393 kb on - strand, within PGA1_c07620 at 789.411 kb on + strand, within PGA1_c07620 at 789.479 kb on + strand, within PGA1_c07620 at 789.503 kb on + strand, within PGA1_c07620 at 789.542 kb on - strand, within PGA1_c07620 at 789.568 kb on - strand, within PGA1_c07620 at 789.578 kb on + strand, within PGA1_c07620 at 789.621 kb on - strand, within PGA1_c07620 at 789.774 kb on - strand, within PGA1_c07620 at 789.815 kb on + strand, within PGA1_c07620 at 789.823 kb on - strand, within PGA1_c07620 at 789.833 kb on + strand, within PGA1_c07620 at 789.841 kb on - strand, within PGA1_c07620 at 789.854 kb on + strand, within PGA1_c07620 at 789.877 kb on + strand, within PGA1_c07620 at 789.885 kb on - strand, within PGA1_c07620 at 789.885 kb on - strand, within PGA1_c07620 at 789.919 kb on - strand, within PGA1_c07620 at 789.922 kb on + strand, within PGA1_c07620 at 790.065 kb on + strand, within PGA1_c07620 at 790.065 kb on + strand, within PGA1_c07620 at 790.065 kb on + strand, within PGA1_c07620 at 790.104 kb on + strand, within PGA1_c07620 at 790.108 kb on - strand, within PGA1_c07620 at 790.119 kb on - strand, within PGA1_c07620 at 790.190 kb on - strand, within PGA1_c07620 at 790.324 kb on - strand at 790.542 kb on + strand at 790.569 kb on + strand at 790.606 kb on + strand at 790.614 kb on - strand at 790.616 kb on + strand at 790.624 kb on - strand at 790.624 kb on - strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.803 kb on + strand at 790.808 kb on + strand at 790.808 kb on + strand at 790.910 kb on - strand, within PGA1_c07630 at 790.910 kb on - strand, within PGA1_c07630 at 790.939 kb on + strand, within PGA1_c07630 at 790.992 kb on + strand, within PGA1_c07630 at 791.038 kb on + strand, within PGA1_c07630 at 791.067 kb on + strand, within PGA1_c07630 at 791.111 kb on + strand, within PGA1_c07630 at 791.112 kb on + strand, within PGA1_c07630 at 791.242 kb on - strand, within PGA1_c07630 at 791.247 kb on - strand, within PGA1_c07630 at 791.301 kb on + strand, within PGA1_c07630 at 791.309 kb on - strand, within PGA1_c07630 at 791.359 kb on + strand, within PGA1_c07630 at 791.366 kb on + strand, within PGA1_c07630 at 791.372 kb on + strand, within PGA1_c07630 at 791.507 kb on + strand at 791.514 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 30C remove 787,037 - PGA1_c07610 0.33 +0.3 787,102 - PGA1_c07610 0.39 -0.6 787,127 + PGA1_c07610 0.41 +1.9 787,127 + PGA1_c07610 0.41 -1.0 787,136 + PGA1_c07610 0.42 -0.3 787,136 + PGA1_c07610 0.42 +0.6 787,136 + PGA1_c07610 0.42 -0.0 787,136 + PGA1_c07610 0.42 +0.6 787,144 - PGA1_c07610 0.43 -1.3 787,144 - PGA1_c07610 0.43 -0.4 787,151 + PGA1_c07610 0.43 -0.7 787,151 + PGA1_c07610 0.43 +0.6 787,151 + PGA1_c07610 0.43 -1.7 787,165 - PGA1_c07610 0.45 +0.5 787,174 + PGA1_c07610 0.46 -0.3 787,182 - PGA1_c07610 0.46 -0.3 787,182 - PGA1_c07610 0.46 -0.0 787,189 - PGA1_c07610 0.47 -0.1 787,293 + PGA1_c07610 0.56 +0.4 787,296 - PGA1_c07610 0.57 +0.3 787,303 - PGA1_c07610 0.57 -3.0 787,303 - PGA1_c07610 0.57 +0.3 787,313 - PGA1_c07610 0.58 +0.5 787,365 + PGA1_c07610 0.63 -0.9 787,400 + PGA1_c07610 0.66 +0.2 787,496 + PGA1_c07610 0.75 -0.2 787,504 - PGA1_c07610 0.75 +1.2 787,507 - PGA1_c07610 0.76 -0.3 787,510 + PGA1_c07610 0.76 -0.9 787,518 - PGA1_c07610 0.77 +0.7 787,578 + PGA1_c07610 0.82 -0.0 787,591 + PGA1_c07610 0.83 -0.1 787,671 + -0.9 787,679 - -0.3 787,679 - -0.8 787,686 - +0.2 787,758 + +0.2 787,777 + -1.1 787,777 + +0.7 787,777 + -0.5 787,777 + -0.1 787,777 + -1.3 787,777 + -0.4 787,777 + +0.6 787,785 - -0.3 787,785 - +0.1 787,785 - +0.6 787,785 - -1.4 787,879 + +1.4 787,879 + -0.6 787,887 - -0.4 787,887 - -2.4 787,887 - -0.1 787,887 - -0.4 787,887 - -2.4 787,887 - +0.2 787,922 - -1.6 787,956 - -0.0 787,999 - -0.8 788,051 + -1.0 788,078 - -2.5 788,098 + -1.3 788,120 + -0.7 788,153 - +0.3 788,153 - -1.4 788,153 - +0.1 788,153 - -1.1 788,178 + PGA1_c07620 0.11 -1.4 788,218 - PGA1_c07620 0.12 +0.3 788,225 + PGA1_c07620 0.12 +0.1 788,228 - PGA1_c07620 0.13 -0.5 788,228 - PGA1_c07620 0.13 -2.4 788,263 + PGA1_c07620 0.14 -2.3 788,263 + PGA1_c07620 0.14 -0.2 788,271 - PGA1_c07620 0.14 -0.6 788,271 - PGA1_c07620 0.14 -2.4 788,271 - PGA1_c07620 0.14 -2.1 788,271 - PGA1_c07620 0.14 -0.1 788,273 - PGA1_c07620 0.14 -2.4 788,381 + PGA1_c07620 0.18 -0.4 788,505 + PGA1_c07620 0.23 +0.1 788,506 + PGA1_c07620 0.23 -0.6 788,588 + PGA1_c07620 0.26 +0.1 788,596 - PGA1_c07620 0.26 -4.1 788,596 - PGA1_c07620 0.26 -0.9 788,633 + PGA1_c07620 0.28 -0.9 788,634 + PGA1_c07620 0.28 -0.9 788,634 + PGA1_c07620 0.28 -1.9 788,641 - PGA1_c07620 0.28 -0.4 788,642 - PGA1_c07620 0.28 -0.8 788,738 + PGA1_c07620 0.31 -1.6 788,746 - PGA1_c07620 0.32 -1.7 788,762 + PGA1_c07620 0.32 -2.9 788,780 - PGA1_c07620 0.33 -1.0 788,823 - PGA1_c07620 0.35 -1.7 788,829 + PGA1_c07620 0.35 -0.0 788,845 - PGA1_c07620 0.35 -1.6 788,895 + PGA1_c07620 0.37 -1.5 788,914 + PGA1_c07620 0.38 -0.9 788,914 + PGA1_c07620 0.38 -2.0 788,969 + PGA1_c07620 0.40 -2.3 788,997 - PGA1_c07620 0.41 -0.6 789,092 + PGA1_c07620 0.45 +0.2 789,119 - PGA1_c07620 0.46 -0.9 789,129 + PGA1_c07620 0.46 -0.8 789,129 + PGA1_c07620 0.46 -0.7 789,147 - PGA1_c07620 0.47 +0.1 789,203 - PGA1_c07620 0.49 +0.2 789,205 + PGA1_c07620 0.49 +0.7 789,303 + PGA1_c07620 0.52 -1.3 789,310 + PGA1_c07620 0.53 -1.9 789,372 - PGA1_c07620 0.55 -2.3 789,393 - PGA1_c07620 0.56 -2.2 789,393 - PGA1_c07620 0.56 +0.1 789,393 - PGA1_c07620 0.56 -2.0 789,411 + PGA1_c07620 0.56 -3.1 789,479 + PGA1_c07620 0.59 -0.7 789,503 + PGA1_c07620 0.60 -0.9 789,542 - PGA1_c07620 0.61 -1.6 789,568 - PGA1_c07620 0.62 -1.9 789,578 + PGA1_c07620 0.63 -1.8 789,621 - PGA1_c07620 0.64 -1.9 789,774 - PGA1_c07620 0.70 +0.7 789,815 + PGA1_c07620 0.71 -1.4 789,823 - PGA1_c07620 0.72 -0.8 789,833 + PGA1_c07620 0.72 -0.5 789,841 - PGA1_c07620 0.72 -1.4 789,854 + PGA1_c07620 0.73 -1.4 789,877 + PGA1_c07620 0.74 +1.4 789,885 - PGA1_c07620 0.74 -1.0 789,885 - PGA1_c07620 0.74 -2.7 789,919 - PGA1_c07620 0.75 -0.7 789,922 + PGA1_c07620 0.75 -1.0 790,065 + PGA1_c07620 0.81 +1.2 790,065 + PGA1_c07620 0.81 -0.3 790,065 + PGA1_c07620 0.81 -0.8 790,104 + PGA1_c07620 0.82 -0.8 790,108 - PGA1_c07620 0.82 -0.9 790,119 - PGA1_c07620 0.83 -1.7 790,190 - PGA1_c07620 0.85 -1.1 790,324 - -3.2 790,542 + +0.4 790,569 + -1.3 790,606 + +1.0 790,614 - -0.1 790,616 + -0.0 790,624 - -0.2 790,624 - +0.1 790,654 + -1.3 790,654 + -0.1 790,654 + +0.7 790,654 + -1.9 790,654 + -0.9 790,662 - -0.4 790,662 - -1.1 790,662 - -0.9 790,662 - -0.0 790,662 - -0.7 790,803 + -0.3 790,808 + -0.3 790,808 + -0.6 790,910 - PGA1_c07630 0.21 +1.0 790,910 - PGA1_c07630 0.21 +0.8 790,939 + PGA1_c07630 0.25 -0.1 790,992 + PGA1_c07630 0.33 -1.5 791,038 + PGA1_c07630 0.39 -0.3 791,067 + PGA1_c07630 0.43 +0.1 791,111 + PGA1_c07630 0.49 -0.6 791,112 + PGA1_c07630 0.50 +0.1 791,242 - PGA1_c07630 0.68 +0.6 791,247 - PGA1_c07630 0.68 +0.7 791,301 + PGA1_c07630 0.76 -0.7 791,309 - PGA1_c07630 0.77 -1.0 791,359 + PGA1_c07630 0.84 -0.5 791,366 + PGA1_c07630 0.85 -0.4 791,372 + PGA1_c07630 0.86 -0.1 791,507 + -0.6 791,514 + -1.1
Or see this region's nucleotide sequence