Experiment: marine broth 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05820 and PGA1_c05830 are separated by 105 nucleotides PGA1_c05830 and PGA1_c05840 are separated by 206 nucleotides PGA1_c05840 and PGA1_c05850 are separated by 361 nucleotides PGA1_c05850 and PGA1_c05860 overlap by 4 nucleotides
PGA1_c05820: PGA1_c05820 - ribosomal protein L11 methyltransferase PrmA, at 597,200 to 598,072
_c05820
PGA1_c05830: PGA1_c05830 - hypothetical protein, at 598,178 to 598,522
_c05830
PGA1_c05840: PGA1_c05840 - Uncharacterized conserved small protein, at 598,729 to 598,947
_c05840
PGA1_c05850: PGA1_c05850 - crossover junction endodeoxyribonuclease RuvC, at 599,309 to 599,806
_c05850
PGA1_c05860: PGA1_c05860 - holliday junction ATP-dependent DNA helicase RuvA, at 599,803 to 600,492
_c05860
Position (kb) 598
599 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 597.812 kb on - strand, within PGA1_c05820 at 597.828 kb on + strand, within PGA1_c05820 at 597.828 kb on + strand, within PGA1_c05820 at 597.828 kb on + strand, within PGA1_c05820 at 597.832 kb on + strand, within PGA1_c05820 at 597.838 kb on + strand, within PGA1_c05820 at 597.838 kb on + strand, within PGA1_c05820 at 597.846 kb on - strand, within PGA1_c05820 at 597.883 kb on + strand, within PGA1_c05820 at 598.005 kb on + strand at 598.011 kb on + strand at 598.011 kb on + strand at 598.019 kb on - strand at 598.159 kb on + strand at 598.160 kb on - strand at 598.179 kb on + strand at 598.181 kb on + strand at 598.182 kb on - strand at 598.189 kb on - strand at 598.216 kb on - strand, within PGA1_c05830 at 598.236 kb on + strand, within PGA1_c05830 at 598.244 kb on - strand, within PGA1_c05830 at 598.244 kb on - strand, within PGA1_c05830 at 598.249 kb on + strand, within PGA1_c05830 at 598.251 kb on + strand, within PGA1_c05830 at 598.251 kb on + strand, within PGA1_c05830 at 598.257 kb on + strand, within PGA1_c05830 at 598.257 kb on - strand, within PGA1_c05830 at 598.257 kb on - strand, within PGA1_c05830 at 598.280 kb on - strand, within PGA1_c05830 at 598.285 kb on - strand, within PGA1_c05830 at 598.360 kb on + strand, within PGA1_c05830 at 598.360 kb on + strand, within PGA1_c05830 at 598.368 kb on - strand, within PGA1_c05830 at 598.368 kb on - strand, within PGA1_c05830 at 598.369 kb on - strand, within PGA1_c05830 at 598.426 kb on + strand, within PGA1_c05830 at 598.466 kb on - strand, within PGA1_c05830 at 598.494 kb on - strand at 598.506 kb on + strand at 598.509 kb on - strand at 598.509 kb on - strand at 598.509 kb on - strand at 598.514 kb on - strand at 598.576 kb on + strand at 598.586 kb on + strand at 598.586 kb on + strand at 598.594 kb on - strand at 598.594 kb on - strand at 598.594 kb on - strand at 598.594 kb on - strand at 598.605 kb on + strand at 598.613 kb on - strand at 598.633 kb on - strand at 598.680 kb on + strand at 598.712 kb on + strand at 598.739 kb on + strand at 598.774 kb on + strand, within PGA1_c05840 at 598.782 kb on - strand, within PGA1_c05840 at 598.782 kb on - strand, within PGA1_c05840 at 598.787 kb on - strand, within PGA1_c05840 at 598.787 kb on - strand, within PGA1_c05840 at 598.787 kb on - strand, within PGA1_c05840 at 598.943 kb on + strand at 599.009 kb on - strand at 599.103 kb on + strand at 599.111 kb on - strand at 599.144 kb on - strand at 599.291 kb on + strand at 599.296 kb on + strand at 599.304 kb on - strand at 599.309 kb on - strand at 599.309 kb on - strand at 599.357 kb on - strand at 599.562 kb on + strand, within PGA1_c05850 at 599.562 kb on - strand, within PGA1_c05850 at 599.577 kb on + strand, within PGA1_c05850 at 599.759 kb on - strand at 599.784 kb on + strand at 599.812 kb on + strand at 599.894 kb on - strand, within PGA1_c05860 at 599.921 kb on + strand, within PGA1_c05860 at 599.941 kb on + strand, within PGA1_c05860
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 30C remove 597,812 - PGA1_c05820 0.70 +1.2 597,828 + PGA1_c05820 0.72 -0.4 597,828 + PGA1_c05820 0.72 +0.7 597,828 + PGA1_c05820 0.72 +0.4 597,832 + PGA1_c05820 0.72 -0.8 597,838 + PGA1_c05820 0.73 +1.4 597,838 + PGA1_c05820 0.73 -0.1 597,846 - PGA1_c05820 0.74 -0.3 597,883 + PGA1_c05820 0.78 -1.3 598,005 + +1.5 598,011 + -0.1 598,011 + +0.1 598,019 - -0.2 598,159 + +1.0 598,160 - -1.2 598,179 + -0.4 598,181 + +0.0 598,182 - -1.4 598,189 - -0.1 598,216 - PGA1_c05830 0.11 +0.5 598,236 + PGA1_c05830 0.17 -2.4 598,244 - PGA1_c05830 0.19 +0.1 598,244 - PGA1_c05830 0.19 +0.4 598,249 + PGA1_c05830 0.21 +0.2 598,251 + PGA1_c05830 0.21 -0.0 598,251 + PGA1_c05830 0.21 -0.5 598,257 + PGA1_c05830 0.23 -0.0 598,257 - PGA1_c05830 0.23 +0.3 598,257 - PGA1_c05830 0.23 -0.5 598,280 - PGA1_c05830 0.30 -0.1 598,285 - PGA1_c05830 0.31 -0.1 598,360 + PGA1_c05830 0.53 +0.5 598,360 + PGA1_c05830 0.53 +0.1 598,368 - PGA1_c05830 0.55 -0.1 598,368 - PGA1_c05830 0.55 -0.1 598,369 - PGA1_c05830 0.55 +0.9 598,426 + PGA1_c05830 0.72 +0.8 598,466 - PGA1_c05830 0.83 -1.1 598,494 - -0.8 598,506 + +2.4 598,509 - -0.1 598,509 - -0.5 598,509 - +0.7 598,514 - +0.8 598,576 + -1.0 598,586 + -0.3 598,586 + -1.0 598,594 - -0.4 598,594 - +0.8 598,594 - +0.5 598,594 - -0.4 598,605 + -1.8 598,613 - -0.1 598,633 - -1.5 598,680 + -0.4 598,712 + -0.2 598,739 + +0.6 598,774 + PGA1_c05840 0.21 -2.9 598,782 - PGA1_c05840 0.24 -0.8 598,782 - PGA1_c05840 0.24 -1.4 598,787 - PGA1_c05840 0.26 -0.6 598,787 - PGA1_c05840 0.26 -0.1 598,787 - PGA1_c05840 0.26 -0.4 598,943 + +1.2 599,009 - +0.3 599,103 + +0.3 599,111 - -0.4 599,144 - -0.4 599,291 + -0.2 599,296 + +1.1 599,304 - +0.3 599,309 - -1.2 599,309 - -0.3 599,357 - -1.2 599,562 + PGA1_c05850 0.51 -1.0 599,562 - PGA1_c05850 0.51 -1.8 599,577 + PGA1_c05850 0.54 -0.7 599,759 - -0.8 599,784 + -0.4 599,812 + -0.9 599,894 - PGA1_c05860 0.13 -0.9 599,921 + PGA1_c05860 0.17 -1.2 599,941 + PGA1_c05860 0.20 +0.8
Or see this region's nucleotide sequence