Experiment: marine broth 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01480 and PGA1_262p01490 are separated by 32 nucleotides PGA1_262p01490 and PGA1_262p01500 overlap by 8 nucleotides
PGA1_262p01480: PGA1_262p01480 - transcriptional regulator, AraC family, at 161,529 to 162,536
_262p01480
PGA1_262p01490: PGA1_262p01490 - putative sarcosine oxidase, gamma subunit, at 162,569 to 163,132
_262p01490
PGA1_262p01500: PGA1_262p01500 - sarcosine oxidase subunit alpha, at 163,125 to 166,091
_262p01500
Position (kb) 162
163
164 Strain fitness (log2 ratio) -2
-1
0
1 at 161.591 kb on - strand at 161.613 kb on - strand at 162.040 kb on + strand, within PGA1_262p01480 at 162.267 kb on - strand, within PGA1_262p01480 at 162.312 kb on - strand, within PGA1_262p01480 at 162.317 kb on - strand, within PGA1_262p01480 at 162.588 kb on + strand at 162.588 kb on + strand at 162.694 kb on - strand, within PGA1_262p01490 at 162.740 kb on + strand, within PGA1_262p01490 at 162.917 kb on - strand, within PGA1_262p01490 at 162.917 kb on - strand, within PGA1_262p01490 at 163.116 kb on - strand at 163.136 kb on + strand at 163.246 kb on + strand at 163.302 kb on + strand at 163.310 kb on - strand at 163.436 kb on - strand, within PGA1_262p01500 at 163.576 kb on - strand, within PGA1_262p01500 at 163.592 kb on - strand, within PGA1_262p01500 at 163.729 kb on + strand, within PGA1_262p01500 at 163.731 kb on - strand, within PGA1_262p01500 at 163.827 kb on + strand, within PGA1_262p01500 at 163.848 kb on + strand, within PGA1_262p01500 at 163.885 kb on + strand, within PGA1_262p01500 at 164.021 kb on + strand, within PGA1_262p01500
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 30C remove 161,591 - -1.0 161,613 - -0.3 162,040 + PGA1_262p01480 0.51 +0.1 162,267 - PGA1_262p01480 0.73 +0.4 162,312 - PGA1_262p01480 0.78 -0.4 162,317 - PGA1_262p01480 0.78 +0.9 162,588 + -2.0 162,588 + +0.4 162,694 - PGA1_262p01490 0.22 -0.4 162,740 + PGA1_262p01490 0.30 -1.6 162,917 - PGA1_262p01490 0.62 -2.7 162,917 - PGA1_262p01490 0.62 +0.0 163,116 - -1.6 163,136 + +0.2 163,246 + +1.3 163,302 + +0.3 163,310 - +0.9 163,436 - PGA1_262p01500 0.10 +0.6 163,576 - PGA1_262p01500 0.15 +0.9 163,592 - PGA1_262p01500 0.16 -0.1 163,729 + PGA1_262p01500 0.20 +0.8 163,731 - PGA1_262p01500 0.20 -1.5 163,827 + PGA1_262p01500 0.24 -0.3 163,848 + PGA1_262p01500 0.24 -0.8 163,885 + PGA1_262p01500 0.26 +0.4 164,021 + PGA1_262p01500 0.30 -1.7
Or see this region's nucleotide sequence