Experiment: marine broth 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00640 and PGA1_262p00650 are separated by 96 nucleotides PGA1_262p00650 and PGA1_262p00660 are separated by 83 nucleotides PGA1_262p00660 and PGA1_262p00670 overlap by 11 nucleotides
PGA1_262p00640: PGA1_262p00640 - Hemolysin-type calcium-binding repeat (2 copies)., at 74,081 to 75,160
_262p00640
PGA1_262p00650: PGA1_262p00650 - putative lytic murein transglycosylase, at 75,257 to 76,432
_262p00650
PGA1_262p00660: PGA1_262p00660 - Predicted periplasmic protein, at 76,516 to 77,337
_262p00660
PGA1_262p00670: PGA1_262p00670 - hypothetical protein, at 77,327 to 78,673
_262p00670
Position (kb) 75
76
77 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 74.271 kb on + strand, within PGA1_262p00640 at 74.279 kb on - strand, within PGA1_262p00640 at 74.279 kb on - strand, within PGA1_262p00640 at 74.324 kb on + strand, within PGA1_262p00640 at 74.327 kb on - strand, within PGA1_262p00640 at 74.329 kb on + strand, within PGA1_262p00640 at 74.336 kb on - strand, within PGA1_262p00640 at 74.337 kb on - strand, within PGA1_262p00640 at 74.337 kb on - strand, within PGA1_262p00640 at 74.393 kb on + strand, within PGA1_262p00640 at 74.401 kb on - strand, within PGA1_262p00640 at 74.515 kb on + strand, within PGA1_262p00640 at 74.543 kb on + strand, within PGA1_262p00640 at 74.587 kb on + strand, within PGA1_262p00640 at 74.645 kb on + strand, within PGA1_262p00640 at 74.645 kb on + strand, within PGA1_262p00640 at 74.645 kb on + strand, within PGA1_262p00640 at 74.662 kb on - strand, within PGA1_262p00640 at 74.680 kb on - strand, within PGA1_262p00640 at 74.680 kb on - strand, within PGA1_262p00640 at 74.698 kb on + strand, within PGA1_262p00640 at 74.710 kb on + strand, within PGA1_262p00640 at 74.710 kb on + strand, within PGA1_262p00640 at 74.718 kb on - strand, within PGA1_262p00640 at 74.754 kb on + strand, within PGA1_262p00640 at 74.761 kb on - strand, within PGA1_262p00640 at 74.761 kb on - strand, within PGA1_262p00640 at 74.807 kb on + strand, within PGA1_262p00640 at 74.869 kb on - strand, within PGA1_262p00640 at 74.898 kb on + strand, within PGA1_262p00640 at 75.089 kb on + strand at 75.089 kb on + strand at 75.089 kb on + strand at 75.097 kb on - strand at 75.097 kb on - strand at 75.102 kb on + strand at 75.195 kb on - strand at 75.230 kb on + strand at 75.248 kb on + strand at 75.258 kb on - strand at 75.258 kb on - strand at 75.272 kb on + strand at 75.315 kb on - strand at 75.426 kb on + strand, within PGA1_262p00650 at 75.673 kb on - strand, within PGA1_262p00650 at 75.715 kb on + strand, within PGA1_262p00650 at 75.938 kb on - strand, within PGA1_262p00650 at 76.014 kb on + strand, within PGA1_262p00650 at 76.014 kb on + strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.055 kb on + strand, within PGA1_262p00650 at 76.380 kb on - strand at 76.467 kb on - strand at 76.474 kb on - strand at 76.545 kb on + strand at 76.837 kb on + strand, within PGA1_262p00660 at 76.949 kb on + strand, within PGA1_262p00660 at 77.022 kb on - strand, within PGA1_262p00660 at 77.059 kb on + strand, within PGA1_262p00660 at 77.189 kb on + strand, within PGA1_262p00660 at 77.215 kb on + strand, within PGA1_262p00660 at 77.303 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 30C remove 74,271 + PGA1_262p00640 0.18 +0.9 74,279 - PGA1_262p00640 0.18 +0.1 74,279 - PGA1_262p00640 0.18 -1.0 74,324 + PGA1_262p00640 0.23 +1.2 74,327 - PGA1_262p00640 0.23 -0.7 74,329 + PGA1_262p00640 0.23 +0.1 74,336 - PGA1_262p00640 0.24 -1.9 74,337 - PGA1_262p00640 0.24 +1.0 74,337 - PGA1_262p00640 0.24 +0.2 74,393 + PGA1_262p00640 0.29 -1.9 74,401 - PGA1_262p00640 0.30 -0.1 74,515 + PGA1_262p00640 0.40 +0.3 74,543 + PGA1_262p00640 0.43 -0.2 74,587 + PGA1_262p00640 0.47 +0.3 74,645 + PGA1_262p00640 0.52 -1.3 74,645 + PGA1_262p00640 0.52 +0.2 74,645 + PGA1_262p00640 0.52 +2.4 74,662 - PGA1_262p00640 0.54 +0.2 74,680 - PGA1_262p00640 0.55 +0.3 74,680 - PGA1_262p00640 0.55 -1.2 74,698 + PGA1_262p00640 0.57 -2.1 74,710 + PGA1_262p00640 0.58 -2.8 74,710 + PGA1_262p00640 0.58 +1.9 74,718 - PGA1_262p00640 0.59 -0.1 74,754 + PGA1_262p00640 0.62 -1.7 74,761 - PGA1_262p00640 0.63 +0.4 74,761 - PGA1_262p00640 0.63 +0.8 74,807 + PGA1_262p00640 0.67 -0.3 74,869 - PGA1_262p00640 0.73 -0.1 74,898 + PGA1_262p00640 0.76 +0.7 75,089 + -0.3 75,089 + +2.3 75,089 + +0.7 75,097 - -0.0 75,097 - +0.6 75,102 + -0.4 75,195 - -2.1 75,230 + -0.1 75,248 + +1.2 75,258 - -1.0 75,258 - +0.2 75,272 + -0.5 75,315 - +0.5 75,426 + PGA1_262p00650 0.14 -1.0 75,673 - PGA1_262p00650 0.35 -1.1 75,715 + PGA1_262p00650 0.39 -1.3 75,938 - PGA1_262p00650 0.58 +0.3 76,014 + PGA1_262p00650 0.64 -0.7 76,014 + PGA1_262p00650 0.64 +0.3 76,022 - PGA1_262p00650 0.65 +0.9 76,022 - PGA1_262p00650 0.65 -0.1 76,022 - PGA1_262p00650 0.65 -0.6 76,055 + PGA1_262p00650 0.68 -1.5 76,380 - -0.8 76,467 - +0.7 76,474 - -0.0 76,545 + -1.1 76,837 + PGA1_262p00660 0.39 -0.7 76,949 + PGA1_262p00660 0.53 +0.2 77,022 - PGA1_262p00660 0.62 +0.0 77,059 + PGA1_262p00660 0.66 -0.7 77,189 + PGA1_262p00660 0.82 +0.7 77,215 + PGA1_262p00660 0.85 +0.9 77,303 + -0.9
Or see this region's nucleotide sequence