Experiment: marine broth 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00100 and PGA1_262p00110 are separated by 4 nucleotides PGA1_262p00110 and PGA1_262p00120 are separated by 3 nucleotides PGA1_262p00120 and PGA1_262p00130 overlap by 97 nucleotides
PGA1_262p00100: PGA1_262p00100 - putative glycosyl transferase, at 12,316 to 13,404
_262p00100
PGA1_262p00110: PGA1_262p00110 - putative glycosyl transferase, at 13,409 to 14,362
_262p00110
PGA1_262p00120: PGA1_262p00120 - succinoglycan biosynthesis protein ExoL, at 14,366 to 15,547
_262p00120
PGA1_262p00130: PGA1_262p00130 - hypothetical protein, at 15,451 to 16,515
_262p00130
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.548 kb on + strand, within PGA1_262p00110 at 13.600 kb on - strand, within PGA1_262p00110 at 13.750 kb on - strand, within PGA1_262p00110 at 13.750 kb on - strand, within PGA1_262p00110 at 13.796 kb on - strand, within PGA1_262p00110 at 13.825 kb on - strand, within PGA1_262p00110 at 13.844 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.864 kb on + strand, within PGA1_262p00110 at 13.889 kb on + strand, within PGA1_262p00110 at 13.935 kb on - strand, within PGA1_262p00110 at 13.985 kb on + strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.111 kb on + strand, within PGA1_262p00110 at 14.111 kb on + strand, within PGA1_262p00110 at 14.119 kb on - strand, within PGA1_262p00110 at 14.273 kb on - strand at 14.286 kb on + strand at 14.356 kb on + strand at 14.396 kb on - strand at 14.505 kb on + strand, within PGA1_262p00120 at 14.513 kb on - strand, within PGA1_262p00120 at 14.566 kb on - strand, within PGA1_262p00120 at 14.762 kb on + strand, within PGA1_262p00120 at 14.770 kb on - strand, within PGA1_262p00120 at 14.840 kb on + strand, within PGA1_262p00120 at 14.859 kb on + strand, within PGA1_262p00120 at 14.867 kb on - strand, within PGA1_262p00120 at 14.937 kb on - strand, within PGA1_262p00120 at 15.003 kb on + strand, within PGA1_262p00120 at 15.037 kb on - strand, within PGA1_262p00120 at 15.037 kb on - strand, within PGA1_262p00120 at 15.130 kb on - strand, within PGA1_262p00120 at 15.295 kb on - strand, within PGA1_262p00120 at 15.331 kb on + strand, within PGA1_262p00120 at 15.331 kb on + strand, within PGA1_262p00120 at 15.357 kb on + strand, within PGA1_262p00120 at 15.441 kb on - strand at 15.500 kb on - strand at 15.579 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.767 kb on - strand, within PGA1_262p00130 at 15.871 kb on - strand, within PGA1_262p00130 at 16.102 kb on + strand, within PGA1_262p00130 at 16.137 kb on + strand, within PGA1_262p00130 at 16.253 kb on + strand, within PGA1_262p00130 at 16.280 kb on + strand, within PGA1_262p00130 at 16.385 kb on + strand, within PGA1_262p00130 at 16.423 kb on + strand at 16.483 kb on - strand at 16.483 kb on - strand at 16.524 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 30C remove 13,548 + PGA1_262p00110 0.15 -1.4 13,600 - PGA1_262p00110 0.20 +0.3 13,750 - PGA1_262p00110 0.36 -0.6 13,750 - PGA1_262p00110 0.36 -0.9 13,796 - PGA1_262p00110 0.41 +0.1 13,825 - PGA1_262p00110 0.44 +0.4 13,844 + PGA1_262p00110 0.46 +0.9 13,854 + PGA1_262p00110 0.47 +0.9 13,854 + PGA1_262p00110 0.47 -0.6 13,854 + PGA1_262p00110 0.47 +0.3 13,864 + PGA1_262p00110 0.48 +0.4 13,889 + PGA1_262p00110 0.50 -0.5 13,935 - PGA1_262p00110 0.55 -0.1 13,985 + PGA1_262p00110 0.60 +0.1 14,039 - PGA1_262p00110 0.66 +0.3 14,039 - PGA1_262p00110 0.66 +2.2 14,039 - PGA1_262p00110 0.66 +0.4 14,039 - PGA1_262p00110 0.66 +0.4 14,111 + PGA1_262p00110 0.74 -0.6 14,111 + PGA1_262p00110 0.74 -0.6 14,119 - PGA1_262p00110 0.74 -0.7 14,273 - -0.3 14,286 + -0.3 14,356 + +1.6 14,396 - +0.3 14,505 + PGA1_262p00120 0.12 -0.3 14,513 - PGA1_262p00120 0.12 -0.4 14,566 - PGA1_262p00120 0.17 -0.8 14,762 + PGA1_262p00120 0.34 -0.0 14,770 - PGA1_262p00120 0.34 -0.5 14,840 + PGA1_262p00120 0.40 +0.5 14,859 + PGA1_262p00120 0.42 -0.2 14,867 - PGA1_262p00120 0.42 -1.8 14,937 - PGA1_262p00120 0.48 -0.8 15,003 + PGA1_262p00120 0.54 -0.8 15,037 - PGA1_262p00120 0.57 -1.1 15,037 - PGA1_262p00120 0.57 -1.5 15,130 - PGA1_262p00120 0.65 -1.3 15,295 - PGA1_262p00120 0.79 -0.9 15,331 + PGA1_262p00120 0.82 +0.1 15,331 + PGA1_262p00120 0.82 -1.3 15,357 + PGA1_262p00120 0.84 -0.6 15,441 - +1.3 15,500 - +0.5 15,579 + PGA1_262p00130 0.12 +0.6 15,629 + PGA1_262p00130 0.17 -0.3 15,629 + PGA1_262p00130 0.17 +1.0 15,629 + PGA1_262p00130 0.17 -0.1 15,629 + PGA1_262p00130 0.17 +0.9 15,629 + PGA1_262p00130 0.17 +1.0 15,637 - PGA1_262p00130 0.17 -0.4 15,637 - PGA1_262p00130 0.17 -0.0 15,637 - PGA1_262p00130 0.17 +0.7 15,637 - PGA1_262p00130 0.17 +0.7 15,767 - PGA1_262p00130 0.30 +0.9 15,871 - PGA1_262p00130 0.39 +1.0 16,102 + PGA1_262p00130 0.61 +0.4 16,137 + PGA1_262p00130 0.64 +0.5 16,253 + PGA1_262p00130 0.75 +0.5 16,280 + PGA1_262p00130 0.78 +0.9 16,385 + PGA1_262p00130 0.88 -0.1 16,423 + -0.1 16,483 - -0.6 16,483 - +0.0 16,524 + -0.0
Or see this region's nucleotide sequence