Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02930

Experiment: marine broth 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02900 and PGA1_c02910 are separated by 3 nucleotidesPGA1_c02910 and PGA1_c02920 are separated by 15 nucleotidesPGA1_c02920 and PGA1_c02930 overlap by 4 nucleotidesPGA1_c02930 and PGA1_c02940 are separated by 77 nucleotides PGA1_c02900: PGA1_c02900 - putative molybdopterin-converting factor subunit 1, at 280,494 to 280,739 _c02900 PGA1_c02910: PGA1_c02910 - molybdopterin-converting factor subunit 2, at 280,743 to 281,204 _c02910 PGA1_c02920: PGA1_c02920 - hypothetical protein, at 281,220 to 281,534 _c02920 PGA1_c02930: PGA1_c02930 - OmpA domain-containing protein, at 281,531 to 283,441 _c02930 PGA1_c02940: PGA1_c02940 - 4-hydroxybenzoate octaprenyltransferase UbiA, at 283,519 to 284,481 _c02940 Position (kb) 281 282 283 284Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 280.610 kb on + strand, within PGA1_c02900at 280.618 kb on - strand, within PGA1_c02900at 280.776 kb on - strandat 280.776 kb on - strandat 280.839 kb on + strand, within PGA1_c02910at 280.847 kb on - strand, within PGA1_c02910at 280.847 kb on - strand, within PGA1_c02910at 280.913 kb on + strand, within PGA1_c02910at 281.024 kb on + strand, within PGA1_c02910at 281.056 kb on + strand, within PGA1_c02910at 281.056 kb on + strand, within PGA1_c02910at 281.251 kb on - strandat 281.251 kb on - strandat 281.299 kb on + strand, within PGA1_c02920at 281.322 kb on + strand, within PGA1_c02920at 281.340 kb on - strand, within PGA1_c02920at 281.385 kb on + strand, within PGA1_c02920at 281.390 kb on + strand, within PGA1_c02920at 281.411 kb on + strand, within PGA1_c02920at 281.522 kb on - strandat 281.524 kb on + strandat 281.527 kb on - strandat 281.536 kb on + strandat 281.548 kb on + strandat 281.566 kb on - strandat 281.725 kb on - strand, within PGA1_c02930at 281.857 kb on + strand, within PGA1_c02930at 281.941 kb on + strand, within PGA1_c02930at 281.993 kb on - strand, within PGA1_c02930at 281.993 kb on - strand, within PGA1_c02930at 281.998 kb on - strand, within PGA1_c02930at 282.022 kb on - strand, within PGA1_c02930at 282.031 kb on + strand, within PGA1_c02930at 282.052 kb on + strand, within PGA1_c02930at 282.052 kb on + strand, within PGA1_c02930at 282.297 kb on - strand, within PGA1_c02930at 282.370 kb on - strand, within PGA1_c02930at 282.370 kb on - strand, within PGA1_c02930at 282.370 kb on - strand, within PGA1_c02930at 282.416 kb on + strand, within PGA1_c02930at 282.424 kb on - strand, within PGA1_c02930at 282.536 kb on - strand, within PGA1_c02930at 282.538 kb on + strand, within PGA1_c02930at 282.596 kb on + strand, within PGA1_c02930at 282.600 kb on + strand, within PGA1_c02930at 282.744 kb on - strand, within PGA1_c02930at 282.794 kb on - strand, within PGA1_c02930at 282.856 kb on + strand, within PGA1_c02930at 282.872 kb on - strand, within PGA1_c02930at 282.966 kb on - strand, within PGA1_c02930at 282.979 kb on - strand, within PGA1_c02930at 283.227 kb on + strand, within PGA1_c02930at 283.237 kb on + strand, within PGA1_c02930at 283.243 kb on + strand, within PGA1_c02930at 283.285 kb on + strandat 283.293 kb on - strandat 283.305 kb on + strandat 283.383 kb on - strandat 283.456 kb on + strandat 283.456 kb on + strandat 283.456 kb on + strandat 283.456 kb on + strandat 283.464 kb on - strandat 283.464 kb on - strandat 283.488 kb on - strandat 283.490 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth 30C
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280,610 + PGA1_c02900 0.47 -0.1
280,618 - PGA1_c02900 0.50 -0.5
280,776 - +0.3
280,776 - -0.8
280,839 + PGA1_c02910 0.21 -0.2
280,847 - PGA1_c02910 0.23 +0.2
280,847 - PGA1_c02910 0.23 -1.2
280,913 + PGA1_c02910 0.37 +0.2
281,024 + PGA1_c02910 0.61 -0.9
281,056 + PGA1_c02910 0.68 +0.9
281,056 + PGA1_c02910 0.68 -0.3
281,251 - +1.0
281,251 - -0.7
281,299 + PGA1_c02920 0.25 -1.8
281,322 + PGA1_c02920 0.32 -1.1
281,340 - PGA1_c02920 0.38 -1.9
281,385 + PGA1_c02920 0.52 -1.9
281,390 + PGA1_c02920 0.54 -2.2
281,411 + PGA1_c02920 0.61 -3.8
281,522 - -0.7
281,524 + -3.7
281,527 - -1.4
281,536 + -2.1
281,548 + -1.4
281,566 - -0.7
281,725 - PGA1_c02930 0.10 -0.6
281,857 + PGA1_c02930 0.17 -2.7
281,941 + PGA1_c02930 0.21 -1.7
281,993 - PGA1_c02930 0.24 -1.9
281,993 - PGA1_c02930 0.24 -0.5
281,998 - PGA1_c02930 0.24 -1.1
282,022 - PGA1_c02930 0.26 -2.3
282,031 + PGA1_c02930 0.26 +0.9
282,052 + PGA1_c02930 0.27 -0.1
282,052 + PGA1_c02930 0.27 -1.7
282,297 - PGA1_c02930 0.40 -2.3
282,370 - PGA1_c02930 0.44 +0.3
282,370 - PGA1_c02930 0.44 -2.0
282,370 - PGA1_c02930 0.44 -1.1
282,416 + PGA1_c02930 0.46 -3.7
282,424 - PGA1_c02930 0.47 -2.1
282,536 - PGA1_c02930 0.53 -3.0
282,538 + PGA1_c02930 0.53 +0.9
282,596 + PGA1_c02930 0.56 -1.9
282,600 + PGA1_c02930 0.56 -1.4
282,744 - PGA1_c02930 0.63 -0.7
282,794 - PGA1_c02930 0.66 -2.3
282,856 + PGA1_c02930 0.69 -2.3
282,872 - PGA1_c02930 0.70 -2.1
282,966 - PGA1_c02930 0.75 -1.6
282,979 - PGA1_c02930 0.76 +0.2
283,227 + PGA1_c02930 0.89 +0.9
283,237 + PGA1_c02930 0.89 -0.9
283,243 + PGA1_c02930 0.90 -1.4
283,285 + -2.7
283,293 - -3.0
283,305 + -2.4
283,383 - -1.6
283,456 + -3.6
283,456 + -3.2
283,456 + -1.7
283,456 + -3.4
283,464 - -1.2
283,464 - -0.7
283,488 - -1.3
283,490 + -2.3

Or see this region's nucleotide sequence