Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23810

Experiment: marine broth 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c23800 and PGA1_c23810 are separated by 168 nucleotidesPGA1_c23810 and PGA1_c23820 overlap by 1 nucleotides PGA1_c23800: PGA1_c23800 - hypothetical protein, at 2,482,899 to 2,485,169 _c23800 PGA1_c23810: PGA1_c23810 - Protein of unknown function (DUF2842)., at 2,485,338 to 2,485,583 _c23810 PGA1_c23820: PGA1_c23820 - adenylosuccinate synthetase PurA, at 2,485,583 to 2,486,896 _c23820 Position (kb) 2485 2486Strain fitness (log2 ratio) -2 -1 0 1 2at 2484.344 kb on - strand, within PGA1_c23800at 2484.549 kb on + strand, within PGA1_c23800at 2484.635 kb on + strand, within PGA1_c23800at 2484.643 kb on - strand, within PGA1_c23800at 2484.919 kb on + strand, within PGA1_c23800at 2484.999 kb on + strandat 2485.007 kb on - strandat 2485.021 kb on + strandat 2485.030 kb on + strandat 2485.071 kb on - strandat 2485.123 kb on + strandat 2485.170 kb on + strandat 2485.170 kb on + strandat 2485.170 kb on + strandat 2485.178 kb on - strandat 2485.178 kb on - strandat 2485.178 kb on - strandat 2485.178 kb on - strandat 2485.178 kb on - strandat 2485.237 kb on - strandat 2485.238 kb on + strandat 2485.238 kb on + strandat 2485.246 kb on - strandat 2485.305 kb on - strandat 2485.366 kb on + strand, within PGA1_c23810at 2485.367 kb on + strand, within PGA1_c23810at 2485.411 kb on + strand, within PGA1_c23810at 2485.414 kb on - strand, within PGA1_c23810at 2485.474 kb on - strand, within PGA1_c23810at 2485.526 kb on + strand, within PGA1_c23810at 2485.545 kb on - strand, within PGA1_c23810

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth 30C
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2,484,344 - PGA1_c23800 0.64 +0.6
2,484,549 + PGA1_c23800 0.73 +0.4
2,484,635 + PGA1_c23800 0.76 -0.4
2,484,643 - PGA1_c23800 0.77 +0.8
2,484,919 + PGA1_c23800 0.89 -0.7
2,484,999 + -1.3
2,485,007 - +1.8
2,485,021 + -1.2
2,485,030 + -2.4
2,485,071 - +1.0
2,485,123 + +0.7
2,485,170 + -0.6
2,485,170 + +0.3
2,485,170 + +0.7
2,485,178 - +1.2
2,485,178 - +0.6
2,485,178 - -0.7
2,485,178 - -0.3
2,485,178 - -0.8
2,485,237 - -0.2
2,485,238 + -0.9
2,485,238 + -0.3
2,485,246 - -1.0
2,485,305 - -2.0
2,485,366 + PGA1_c23810 0.11 -1.5
2,485,367 + PGA1_c23810 0.12 +0.0
2,485,411 + PGA1_c23810 0.30 -1.5
2,485,414 - PGA1_c23810 0.31 -0.1
2,485,474 - PGA1_c23810 0.55 -1.4
2,485,526 + PGA1_c23810 0.76 -1.7
2,485,545 - PGA1_c23810 0.84 -1.4

Or see this region's nucleotide sequence