Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01670

Experiment: marine broth 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01650 and PGA1_c01660 are separated by 67 nucleotidesPGA1_c01660 and PGA1_c01670 are separated by 73 nucleotidesPGA1_c01670 and PGA1_c01680 are separated by 205 nucleotidesPGA1_c01680 and PGA1_c01690 are separated by 12 nucleotidesPGA1_c01690 and PGA1_c01700 are separated by 99 nucleotides PGA1_c01650: PGA1_c01650 - conserved hypothetical protein, at 158,211 to 158,831 _c01650 PGA1_c01660: PGA1_c01660 - hypothetical protein, at 158,899 to 159,243 _c01660 PGA1_c01670: PGA1_c01670 - hypothetical protein, at 159,317 to 159,691 _c01670 PGA1_c01680: PGA1_c01680 - 50S ribosomal protein L29, at 159,897 to 160,097 _c01680 PGA1_c01690: PGA1_c01690 - 30S ribosomal protein S17, at 160,110 to 160,340 _c01690 PGA1_c01700: PGA1_c01700 - 50S ribosomal protein L14, at 160,440 to 160,808 _c01700 Position (kb) 159 160Strain fitness (log2 ratio) -2 -1 0 1 2at 158.337 kb on + strand, within PGA1_c01650at 158.337 kb on + strand, within PGA1_c01650at 158.337 kb on + strand, within PGA1_c01650at 158.337 kb on + strand, within PGA1_c01650at 158.337 kb on + strand, within PGA1_c01650at 158.337 kb on + strand, within PGA1_c01650at 158.337 kb on + strand, within PGA1_c01650at 158.342 kb on + strand, within PGA1_c01650at 158.342 kb on + strand, within PGA1_c01650at 158.345 kb on - strand, within PGA1_c01650at 158.345 kb on - strand, within PGA1_c01650at 158.345 kb on - strand, within PGA1_c01650at 158.345 kb on - strand, within PGA1_c01650at 158.347 kb on + strand, within PGA1_c01650at 158.347 kb on + strand, within PGA1_c01650at 158.350 kb on - strand, within PGA1_c01650at 158.350 kb on - strand, within PGA1_c01650at 158.397 kb on + strand, within PGA1_c01650at 158.397 kb on + strand, within PGA1_c01650at 158.410 kb on - strand, within PGA1_c01650at 158.502 kb on - strand, within PGA1_c01650at 158.561 kb on + strand, within PGA1_c01650at 158.561 kb on + strand, within PGA1_c01650at 158.676 kb on + strand, within PGA1_c01650at 158.686 kb on + strand, within PGA1_c01650at 158.744 kb on - strand, within PGA1_c01650at 158.769 kb on - strand, within PGA1_c01650at 158.809 kb on + strandat 158.809 kb on + strandat 158.809 kb on + strandat 158.817 kb on - strandat 158.817 kb on - strandat 158.860 kb on + strandat 158.860 kb on + strandat 158.863 kb on + strandat 158.863 kb on + strandat 158.875 kb on + strandat 158.875 kb on + strandat 158.877 kb on + strandat 158.877 kb on + strandat 158.877 kb on + strandat 158.877 kb on + strandat 158.877 kb on + strandat 158.877 kb on + strandat 158.877 kb on + strandat 158.877 kb on + strandat 158.877 kb on + strandat 158.877 kb on + strandat 158.877 kb on + strandat 158.877 kb on + strandat 158.878 kb on + strandat 158.878 kb on + strandat 158.878 kb on + strandat 158.883 kb on - strandat 158.885 kb on - strandat 158.885 kb on - strandat 158.885 kb on - strandat 158.885 kb on - strandat 158.885 kb on - strandat 158.885 kb on - strandat 158.885 kb on - strandat 158.943 kb on + strand, within PGA1_c01660at 159.047 kb on - strand, within PGA1_c01660at 159.056 kb on + strand, within PGA1_c01660at 159.081 kb on + strand, within PGA1_c01660at 159.133 kb on + strand, within PGA1_c01660at 159.133 kb on - strand, within PGA1_c01660at 159.146 kb on - strand, within PGA1_c01660at 159.146 kb on - strand, within PGA1_c01660at 159.157 kb on + strand, within PGA1_c01660at 159.159 kb on + strand, within PGA1_c01660at 159.164 kb on - strand, within PGA1_c01660at 159.167 kb on - strand, within PGA1_c01660at 159.222 kb on + strandat 159.222 kb on + strandat 159.225 kb on - strandat 159.395 kb on - strand, within PGA1_c01670at 159.395 kb on - strand, within PGA1_c01670at 159.436 kb on - strand, within PGA1_c01670at 159.538 kb on + strand, within PGA1_c01670at 159.571 kb on - strand, within PGA1_c01670at 159.576 kb on - strand, within PGA1_c01670at 159.616 kb on - strand, within PGA1_c01670at 159.661 kb on - strandat 159.674 kb on - strandat 159.674 kb on - strandat 159.676 kb on + strandat 159.676 kb on + strandat 159.683 kb on + strandat 159.696 kb on + strandat 159.714 kb on + strandat 159.721 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth 30C
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158,337 + PGA1_c01650 0.20 -0.8
158,337 + PGA1_c01650 0.20 +0.6
158,337 + PGA1_c01650 0.20 -1.1
158,337 + PGA1_c01650 0.20 +0.4
158,337 + PGA1_c01650 0.20 -1.5
158,337 + PGA1_c01650 0.20 +0.3
158,337 + PGA1_c01650 0.20 -1.8
158,342 + PGA1_c01650 0.21 +0.0
158,342 + PGA1_c01650 0.21 -0.9
158,345 - PGA1_c01650 0.22 +1.1
158,345 - PGA1_c01650 0.22 +0.1
158,345 - PGA1_c01650 0.22 -0.4
158,345 - PGA1_c01650 0.22 +0.8
158,347 + PGA1_c01650 0.22 +0.4
158,347 + PGA1_c01650 0.22 -1.1
158,350 - PGA1_c01650 0.22 +0.6
158,350 - PGA1_c01650 0.22 +0.6
158,397 + PGA1_c01650 0.30 -0.1
158,397 + PGA1_c01650 0.30 +0.4
158,410 - PGA1_c01650 0.32 +1.7
158,502 - PGA1_c01650 0.47 +1.5
158,561 + PGA1_c01650 0.56 +0.5
158,561 + PGA1_c01650 0.56 +0.2
158,676 + PGA1_c01650 0.75 +0.3
158,686 + PGA1_c01650 0.76 +0.7
158,744 - PGA1_c01650 0.86 +0.1
158,769 - PGA1_c01650 0.90 -0.3
158,809 + +0.2
158,809 + -1.8
158,809 + -0.3
158,817 - -0.1
158,817 - -0.1
158,860 + -0.6
158,860 + +0.6
158,863 + +0.3
158,863 + -0.7
158,875 + +0.2
158,875 + -1.9
158,877 + +0.6
158,877 + -0.1
158,877 + +0.5
158,877 + +0.6
158,877 + +0.3
158,877 + +0.5
158,877 + +0.3
158,877 + +0.2
158,877 + -0.1
158,877 + +0.5
158,877 + -2.6
158,877 + -0.1
158,878 + +2.1
158,878 + +1.5
158,878 + +0.5
158,883 - +0.1
158,885 - +0.2
158,885 - +0.6
158,885 - -0.6
158,885 - -0.6
158,885 - -0.5
158,885 - -0.6
158,885 - +0.5
158,943 + PGA1_c01660 0.13 -1.1
159,047 - PGA1_c01660 0.43 +0.2
159,056 + PGA1_c01660 0.46 -0.2
159,081 + PGA1_c01660 0.53 +0.7
159,133 + PGA1_c01660 0.68 -0.6
159,133 - PGA1_c01660 0.68 -1.2
159,146 - PGA1_c01660 0.72 +0.0
159,146 - PGA1_c01660 0.72 +0.5
159,157 + PGA1_c01660 0.75 +0.7
159,159 + PGA1_c01660 0.75 +0.2
159,164 - PGA1_c01660 0.77 +0.7
159,167 - PGA1_c01660 0.78 +0.4
159,222 + -0.6
159,222 + -0.2
159,225 - +1.8
159,395 - PGA1_c01670 0.21 -0.1
159,395 - PGA1_c01670 0.21 -0.7
159,436 - PGA1_c01670 0.32 -2.4
159,538 + PGA1_c01670 0.59 +0.1
159,571 - PGA1_c01670 0.68 -1.2
159,576 - PGA1_c01670 0.69 -0.1
159,616 - PGA1_c01670 0.80 -0.5
159,661 - -1.1
159,674 - +0.5
159,674 - -1.3
159,676 + +0.5
159,676 + +0.2
159,683 + -1.9
159,696 + +0.9
159,714 + +0.5
159,721 + +0.2

Or see this region's nucleotide sequence