Experiment: marine broth 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13810 and PGA1_c13820 are separated by 8 nucleotides PGA1_c13820 and PGA1_c13830 are separated by 151 nucleotides PGA1_c13830 and PGA1_c13840 are separated by 554 nucleotides
PGA1_c13810: PGA1_c13810 - putative long-chain specific acyl-CoA dehydrogenase, at 1,427,444 to 1,428,607
_c13810
PGA1_c13820: PGA1_c13820 - 4'-phosphopantetheinyl transferase-like protein, at 1,428,616 to 1,429,389
_c13820
PGA1_c13830: PGA1_c13830 - hypothetical protein, at 1,429,541 to 1,430,131
_c13830
PGA1_c13840: PGA1_c13840 - putative transcriptional regulator, AraC family, at 1,430,686 to 1,431,753
_c13840
Position (kb) 1429
1430
1431 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1428.604 kb on + strand at 1428.612 kb on + strand at 1428.685 kb on + strand at 1428.693 kb on - strand at 1428.742 kb on - strand, within PGA1_c13820 at 1428.852 kb on + strand, within PGA1_c13820 at 1428.858 kb on + strand, within PGA1_c13820 at 1428.866 kb on - strand, within PGA1_c13820 at 1428.881 kb on + strand, within PGA1_c13820 at 1428.884 kb on - strand, within PGA1_c13820 at 1428.911 kb on + strand, within PGA1_c13820 at 1428.919 kb on - strand, within PGA1_c13820 at 1428.962 kb on + strand, within PGA1_c13820 at 1429.015 kb on - strand, within PGA1_c13820 at 1429.059 kb on + strand, within PGA1_c13820 at 1429.067 kb on - strand, within PGA1_c13820 at 1429.075 kb on + strand, within PGA1_c13820 at 1429.075 kb on + strand, within PGA1_c13820 at 1429.083 kb on - strand, within PGA1_c13820 at 1429.099 kb on - strand, within PGA1_c13820 at 1429.109 kb on - strand, within PGA1_c13820 at 1429.138 kb on + strand, within PGA1_c13820 at 1429.138 kb on + strand, within PGA1_c13820 at 1429.138 kb on + strand, within PGA1_c13820 at 1429.139 kb on + strand, within PGA1_c13820 at 1429.139 kb on - strand, within PGA1_c13820 at 1429.145 kb on + strand, within PGA1_c13820 at 1429.146 kb on - strand, within PGA1_c13820 at 1429.146 kb on - strand, within PGA1_c13820 at 1429.146 kb on - strand, within PGA1_c13820 at 1429.153 kb on - strand, within PGA1_c13820 at 1429.181 kb on + strand, within PGA1_c13820 at 1429.191 kb on - strand, within PGA1_c13820 at 1429.193 kb on + strand, within PGA1_c13820 at 1429.201 kb on - strand, within PGA1_c13820 at 1429.209 kb on - strand, within PGA1_c13820 at 1429.226 kb on - strand, within PGA1_c13820 at 1429.226 kb on - strand, within PGA1_c13820 at 1429.226 kb on - strand, within PGA1_c13820 at 1429.231 kb on - strand, within PGA1_c13820 at 1429.231 kb on - strand, within PGA1_c13820 at 1429.247 kb on + strand, within PGA1_c13820 at 1429.255 kb on - strand, within PGA1_c13820 at 1429.255 kb on - strand, within PGA1_c13820 at 1429.255 kb on - strand, within PGA1_c13820 at 1429.274 kb on - strand, within PGA1_c13820 at 1429.279 kb on - strand, within PGA1_c13820 at 1429.337 kb on + strand at 1429.352 kb on + strand at 1429.383 kb on + strand at 1429.413 kb on + strand at 1429.421 kb on - strand at 1429.459 kb on - strand at 1429.459 kb on - strand at 1429.526 kb on + strand at 1429.585 kb on - strand at 1429.585 kb on - strand at 1429.601 kb on + strand, within PGA1_c13830 at 1429.664 kb on - strand, within PGA1_c13830 at 1429.664 kb on - strand, within PGA1_c13830 at 1429.678 kb on - strand, within PGA1_c13830 at 1429.760 kb on + strand, within PGA1_c13830 at 1429.799 kb on + strand, within PGA1_c13830 at 1429.802 kb on - strand, within PGA1_c13830 at 1429.815 kb on + strand, within PGA1_c13830 at 1429.902 kb on + strand, within PGA1_c13830 at 1429.908 kb on + strand, within PGA1_c13830 at 1429.946 kb on + strand, within PGA1_c13830 at 1430.010 kb on + strand, within PGA1_c13830 at 1430.020 kb on + strand, within PGA1_c13830 at 1430.020 kb on + strand, within PGA1_c13830 at 1430.033 kb on - strand, within PGA1_c13830 at 1430.040 kb on + strand, within PGA1_c13830 at 1430.048 kb on + strand, within PGA1_c13830 at 1430.050 kb on + strand, within PGA1_c13830 at 1430.050 kb on - strand, within PGA1_c13830 at 1430.094 kb on + strand at 1430.102 kb on - strand at 1430.111 kb on + strand at 1430.126 kb on + strand at 1430.126 kb on + strand at 1430.134 kb on - strand at 1430.134 kb on - strand at 1430.167 kb on + strand at 1430.175 kb on - strand at 1430.175 kb on - strand at 1430.175 kb on - strand at 1430.175 kb on - strand at 1430.175 kb on - strand at 1430.175 kb on - strand at 1430.175 kb on - strand at 1430.182 kb on + strand at 1430.182 kb on + strand at 1430.182 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.196 kb on + strand at 1430.198 kb on + strand at 1430.198 kb on + strand at 1430.198 kb on + strand at 1430.198 kb on + strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.205 kb on - strand at 1430.206 kb on - strand at 1430.206 kb on - strand at 1430.207 kb on - strand at 1430.253 kb on + strand at 1430.253 kb on + strand at 1430.253 kb on + strand at 1430.260 kb on + strand at 1430.261 kb on - strand at 1430.261 kb on - strand at 1430.262 kb on + strand at 1430.262 kb on + strand at 1430.262 kb on + strand at 1430.262 kb on + strand at 1430.262 kb on + strand at 1430.262 kb on + strand at 1430.262 kb on + strand at 1430.264 kb on + strand at 1430.270 kb on - strand at 1430.270 kb on - strand at 1430.270 kb on - strand at 1430.270 kb on - strand at 1430.270 kb on - strand at 1430.270 kb on - strand at 1430.291 kb on + strand at 1430.291 kb on + strand at 1430.291 kb on + strand at 1430.291 kb on + strand at 1430.291 kb on + strand at 1430.291 kb on + strand at 1430.291 kb on + strand at 1430.294 kb on + strand at 1430.299 kb on - strand at 1430.299 kb on - strand at 1430.299 kb on - strand at 1430.299 kb on - strand at 1430.301 kb on + strand at 1430.301 kb on + strand at 1430.301 kb on + strand at 1430.301 kb on + strand at 1430.302 kb on + strand at 1430.302 kb on + strand at 1430.309 kb on - strand at 1430.309 kb on - strand at 1430.309 kb on - strand at 1430.309 kb on - strand at 1430.310 kb on - strand at 1430.310 kb on - strand at 1430.310 kb on - strand at 1430.312 kb on + strand at 1430.318 kb on + strand at 1430.325 kb on + strand at 1430.326 kb on - strand at 1430.326 kb on - strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.340 kb on + strand at 1430.340 kb on + strand at 1430.348 kb on - strand at 1430.348 kb on - strand at 1430.348 kb on - strand at 1430.359 kb on + strand at 1430.359 kb on + strand at 1430.359 kb on + strand at 1430.359 kb on + strand at 1430.359 kb on + strand at 1430.367 kb on - strand at 1430.367 kb on - strand at 1430.367 kb on - strand at 1430.367 kb on - strand at 1430.369 kb on + strand at 1430.377 kb on - strand at 1430.377 kb on - strand at 1430.377 kb on - strand at 1430.384 kb on + strand at 1430.384 kb on + strand at 1430.394 kb on + strand at 1430.409 kb on + strand at 1430.409 kb on + strand at 1430.417 kb on - strand at 1430.448 kb on - strand at 1430.451 kb on + strand at 1430.483 kb on + strand at 1430.491 kb on - strand at 1430.502 kb on + strand at 1430.509 kb on + strand at 1430.509 kb on + strand at 1430.526 kb on + strand at 1430.531 kb on + strand at 1430.534 kb on - strand at 1430.584 kb on + strand at 1430.584 kb on + strand at 1430.589 kb on + strand at 1430.592 kb on - strand at 1430.592 kb on - strand at 1430.594 kb on + strand at 1430.597 kb on - strand at 1430.601 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.670 kb on + strand at 1430.672 kb on - strand at 1430.674 kb on + strand at 1430.674 kb on + strand at 1430.675 kb on + strand at 1430.676 kb on - strand at 1430.676 kb on - strand at 1430.676 kb on - strand at 1430.682 kb on - strand at 1430.775 kb on - strand at 1430.812 kb on + strand, within PGA1_c13840 at 1430.820 kb on - strand, within PGA1_c13840 at 1430.820 kb on - strand, within PGA1_c13840 at 1430.827 kb on - strand, within PGA1_c13840 at 1430.832 kb on - strand, within PGA1_c13840 at 1430.843 kb on - strand, within PGA1_c13840 at 1430.844 kb on - strand, within PGA1_c13840 at 1430.928 kb on + strand, within PGA1_c13840 at 1430.998 kb on + strand, within PGA1_c13840 at 1431.023 kb on - strand, within PGA1_c13840 at 1431.125 kb on - strand, within PGA1_c13840 at 1431.130 kb on + strand, within PGA1_c13840
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 30C remove 1,428,604 + -0.3 1,428,612 + +0.2 1,428,685 + -0.5 1,428,693 - +0.2 1,428,742 - PGA1_c13820 0.16 -0.5 1,428,852 + PGA1_c13820 0.30 +0.2 1,428,858 + PGA1_c13820 0.31 +0.0 1,428,866 - PGA1_c13820 0.32 -0.1 1,428,881 + PGA1_c13820 0.34 +1.6 1,428,884 - PGA1_c13820 0.35 +0.3 1,428,911 + PGA1_c13820 0.38 -0.3 1,428,919 - PGA1_c13820 0.39 +1.7 1,428,962 + PGA1_c13820 0.45 -1.1 1,429,015 - PGA1_c13820 0.52 +0.2 1,429,059 + PGA1_c13820 0.57 +0.4 1,429,067 - PGA1_c13820 0.58 -0.0 1,429,075 + PGA1_c13820 0.59 +0.6 1,429,075 + PGA1_c13820 0.59 +1.1 1,429,083 - PGA1_c13820 0.60 -0.8 1,429,099 - PGA1_c13820 0.62 -1.0 1,429,109 - PGA1_c13820 0.64 -0.0 1,429,138 + PGA1_c13820 0.67 +0.9 1,429,138 + PGA1_c13820 0.67 +0.8 1,429,138 + PGA1_c13820 0.67 +1.0 1,429,139 + PGA1_c13820 0.68 +0.6 1,429,139 - PGA1_c13820 0.68 +1.4 1,429,145 + PGA1_c13820 0.68 -0.6 1,429,146 - PGA1_c13820 0.68 +0.2 1,429,146 - PGA1_c13820 0.68 -1.0 1,429,146 - PGA1_c13820 0.68 -0.1 1,429,153 - PGA1_c13820 0.69 -1.0 1,429,181 + PGA1_c13820 0.73 +0.3 1,429,191 - PGA1_c13820 0.74 -0.1 1,429,193 + PGA1_c13820 0.75 -0.7 1,429,201 - PGA1_c13820 0.76 -0.4 1,429,209 - PGA1_c13820 0.77 +0.1 1,429,226 - PGA1_c13820 0.79 -0.3 1,429,226 - PGA1_c13820 0.79 +0.4 1,429,226 - PGA1_c13820 0.79 -0.4 1,429,231 - PGA1_c13820 0.79 +1.3 1,429,231 - PGA1_c13820 0.79 +0.9 1,429,247 + PGA1_c13820 0.82 -0.1 1,429,255 - PGA1_c13820 0.83 +0.2 1,429,255 - PGA1_c13820 0.83 +0.7 1,429,255 - PGA1_c13820 0.83 +1.0 1,429,274 - PGA1_c13820 0.85 +0.7 1,429,279 - PGA1_c13820 0.86 -0.5 1,429,337 + +1.2 1,429,352 + -0.1 1,429,383 + +0.4 1,429,413 + -1.8 1,429,421 - -2.0 1,429,459 - +0.4 1,429,459 - +1.4 1,429,526 + +0.1 1,429,585 - -1.7 1,429,585 - +0.2 1,429,601 + PGA1_c13830 0.10 -0.9 1,429,664 - PGA1_c13830 0.21 +0.1 1,429,664 - PGA1_c13830 0.21 +0.3 1,429,678 - PGA1_c13830 0.23 -0.1 1,429,760 + PGA1_c13830 0.37 -0.8 1,429,799 + PGA1_c13830 0.44 -2.0 1,429,802 - PGA1_c13830 0.44 -2.0 1,429,815 + PGA1_c13830 0.46 -1.2 1,429,902 + PGA1_c13830 0.61 +0.1 1,429,908 + PGA1_c13830 0.62 +0.0 1,429,946 + PGA1_c13830 0.69 -2.9 1,430,010 + PGA1_c13830 0.79 +0.7 1,430,020 + PGA1_c13830 0.81 -0.4 1,430,020 + PGA1_c13830 0.81 -0.8 1,430,033 - PGA1_c13830 0.83 -0.9 1,430,040 + PGA1_c13830 0.84 -1.3 1,430,048 + PGA1_c13830 0.86 +1.4 1,430,050 + PGA1_c13830 0.86 -0.3 1,430,050 - PGA1_c13830 0.86 -0.2 1,430,094 + -2.2 1,430,102 - +0.7 1,430,111 + +0.8 1,430,126 + +0.1 1,430,126 + +0.3 1,430,134 - +1.1 1,430,134 - +0.2 1,430,167 + +0.5 1,430,175 - +0.2 1,430,175 - -0.7 1,430,175 - -1.0 1,430,175 - -0.9 1,430,175 - -1.2 1,430,175 - +1.2 1,430,175 - -0.6 1,430,182 + -0.2 1,430,182 + -2.2 1,430,182 + -1.6 1,430,192 + -0.1 1,430,192 + +1.3 1,430,192 + +0.5 1,430,192 + +0.5 1,430,192 + +0.1 1,430,192 + -2.7 1,430,192 + -0.0 1,430,192 + -0.5 1,430,192 + -0.6 1,430,192 + +0.0 1,430,196 + +0.0 1,430,198 + -1.2 1,430,198 + -0.6 1,430,198 + -0.0 1,430,198 + -0.1 1,430,200 - -0.0 1,430,200 - +0.8 1,430,200 - -1.6 1,430,200 - +0.4 1,430,200 - +0.7 1,430,200 - +1.2 1,430,200 - +0.8 1,430,200 - +0.2 1,430,200 - +1.4 1,430,205 - +0.9 1,430,206 - -0.4 1,430,206 - -2.9 1,430,207 - -2.7 1,430,253 + +0.7 1,430,253 + +0.0 1,430,253 + +0.4 1,430,260 + -0.3 1,430,261 - +0.1 1,430,261 - +0.5 1,430,262 + -0.1 1,430,262 + +1.0 1,430,262 + +1.4 1,430,262 + +0.4 1,430,262 + -1.6 1,430,262 + +0.2 1,430,262 + -2.4 1,430,264 + -0.3 1,430,270 - +0.1 1,430,270 - +1.3 1,430,270 - +0.4 1,430,270 - -0.6 1,430,270 - +0.6 1,430,270 - +1.3 1,430,291 + -1.4 1,430,291 + -2.4 1,430,291 + -0.2 1,430,291 + +0.2 1,430,291 + +0.3 1,430,291 + +1.0 1,430,291 + +0.2 1,430,294 + +0.5 1,430,299 - +0.2 1,430,299 - -0.4 1,430,299 - +0.0 1,430,299 - +0.3 1,430,301 + +0.8 1,430,301 + +0.4 1,430,301 + -0.8 1,430,301 + +0.4 1,430,302 + +0.7 1,430,302 + -0.3 1,430,309 - -0.6 1,430,309 - -0.9 1,430,309 - -0.4 1,430,309 - +1.3 1,430,310 - -0.6 1,430,310 - -1.2 1,430,310 - +0.4 1,430,312 + +0.3 1,430,318 + -0.9 1,430,325 + -1.2 1,430,326 - +0.4 1,430,326 - -0.7 1,430,330 + +0.0 1,430,330 + +0.3 1,430,330 + -1.6 1,430,330 + +2.6 1,430,330 + -0.5 1,430,330 + -0.2 1,430,330 + +0.6 1,430,330 + +0.8 1,430,330 + -1.2 1,430,330 + -2.0 1,430,330 + -0.1 1,430,338 - -1.7 1,430,338 - +0.8 1,430,338 - -0.4 1,430,338 - +0.3 1,430,338 - -0.3 1,430,338 - -1.3 1,430,338 - +0.6 1,430,338 - -1.6 1,430,338 - +0.7 1,430,338 - +0.2 1,430,340 + +0.3 1,430,340 + -0.0 1,430,348 - +0.4 1,430,348 - +1.2 1,430,348 - +0.5 1,430,359 + +2.4 1,430,359 + +0.4 1,430,359 + -0.5 1,430,359 + -2.2 1,430,359 + -0.5 1,430,367 - -0.7 1,430,367 - +0.4 1,430,367 - -1.2 1,430,367 - -0.4 1,430,369 + -0.9 1,430,377 - -0.0 1,430,377 - -2.1 1,430,377 - -0.5 1,430,384 + -0.7 1,430,384 + -1.1 1,430,394 + +1.4 1,430,409 + +1.0 1,430,409 + -0.6 1,430,417 - -1.9 1,430,448 - +0.4 1,430,451 + -0.3 1,430,483 + +0.3 1,430,491 - +0.2 1,430,502 + -2.7 1,430,509 + +0.1 1,430,509 + -1.1 1,430,526 + -0.7 1,430,531 + -0.9 1,430,534 - +1.2 1,430,584 + +0.8 1,430,584 + +1.4 1,430,589 + +0.2 1,430,592 - +1.0 1,430,592 - -0.4 1,430,594 + -0.8 1,430,597 - +0.3 1,430,601 + -0.3 1,430,668 + -0.7 1,430,668 + +0.3 1,430,668 + -0.4 1,430,668 + -1.4 1,430,668 + +1.0 1,430,668 + -1.7 1,430,668 + +0.5 1,430,668 + +0.8 1,430,668 + -0.3 1,430,668 + -0.2 1,430,668 + -1.6 1,430,670 + +1.0 1,430,672 - +0.2 1,430,674 + -1.1 1,430,674 + -1.7 1,430,675 + -1.2 1,430,676 - +0.1 1,430,676 - +0.8 1,430,676 - -0.2 1,430,682 - -0.9 1,430,775 - -0.2 1,430,812 + PGA1_c13840 0.12 -1.7 1,430,820 - PGA1_c13840 0.13 +0.8 1,430,820 - PGA1_c13840 0.13 +1.4 1,430,827 - PGA1_c13840 0.13 +0.2 1,430,832 - PGA1_c13840 0.14 -1.1 1,430,843 - PGA1_c13840 0.15 -1.3 1,430,844 - PGA1_c13840 0.15 +1.1 1,430,928 + PGA1_c13840 0.23 -0.4 1,430,998 + PGA1_c13840 0.29 -0.1 1,431,023 - PGA1_c13840 0.32 -0.2 1,431,125 - PGA1_c13840 0.41 +0.4 1,431,130 + PGA1_c13840 0.42 +0.4
Or see this region's nucleotide sequence