Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27020

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27010 and BWI76_RS27015 overlap by 4 nucleotidesBWI76_RS27015 and BWI76_RS27020 are separated by 168 nucleotidesBWI76_RS27020 and BWI76_RS27025 are separated by 75 nucleotides BWI76_RS27010: BWI76_RS27010 - O-acetyltransferase, at 5,603,429 to 5,604,424 _RS27010 BWI76_RS27015: BWI76_RS27015 - hypothetical protein, at 5,604,421 to 5,604,801 _RS27015 BWI76_RS27020: BWI76_RS27020 - Xylulose kinase (EC 2.7.1.17) (from data), at 5,604,970 to 5,606,424 _RS27020 BWI76_RS27025: BWI76_RS27025 - Xylose isomerase (EC 5.3.1.5) (from data), at 5,606,500 to 5,607,822 _RS27025 Position (kb) 5604 5605 5606 5607Strain fitness (log2 ratio) -2 -1 0 1 2at 5603.990 kb on + strand, within BWI76_RS27010at 5603.998 kb on - strand, within BWI76_RS27010at 5604.043 kb on + strand, within BWI76_RS27010at 5604.053 kb on + strand, within BWI76_RS27010at 5604.056 kb on - strand, within BWI76_RS27010at 5604.061 kb on - strand, within BWI76_RS27010at 5604.061 kb on - strand, within BWI76_RS27010at 5604.061 kb on - strand, within BWI76_RS27010at 5604.203 kb on - strandat 5604.210 kb on + strand, within BWI76_RS27010at 5604.364 kb on - strandat 5604.570 kb on + strand, within BWI76_RS27015at 5604.594 kb on + strand, within BWI76_RS27015at 5604.684 kb on + strand, within BWI76_RS27015at 5604.759 kb on + strand, within BWI76_RS27015at 5604.814 kb on + strandat 5604.814 kb on + strandat 5604.814 kb on + strandat 5604.814 kb on + strandat 5604.822 kb on - strandat 5604.822 kb on - strandat 5604.822 kb on - strandat 5604.822 kb on - strandat 5604.822 kb on - strandat 5604.893 kb on + strandat 5605.154 kb on + strand, within BWI76_RS27020at 5605.330 kb on - strand, within BWI76_RS27020at 5605.402 kb on + strand, within BWI76_RS27020at 5605.429 kb on - strand, within BWI76_RS27020at 5605.510 kb on + strand, within BWI76_RS27020at 5605.518 kb on - strand, within BWI76_RS27020at 5605.549 kb on + strand, within BWI76_RS27020at 5605.845 kb on + strand, within BWI76_RS27020at 5606.189 kb on - strand, within BWI76_RS27020at 5606.209 kb on + strand, within BWI76_RS27020at 5606.217 kb on - strand, within BWI76_RS27020at 5606.217 kb on - strand, within BWI76_RS27020at 5606.266 kb on + strand, within BWI76_RS27020at 5606.351 kb on + strandat 5606.357 kb on + strandat 5606.357 kb on + strandat 5606.365 kb on - strandat 5606.391 kb on + strandat 5606.399 kb on - strandat 5606.414 kb on - strandat 5606.458 kb on + strandat 5606.458 kb on + strandat 5606.513 kb on - strandat 5606.573 kb on + strandat 5606.573 kb on + strandat 5606.575 kb on - strandat 5606.593 kb on - strandat 5606.608 kb on - strandat 5606.645 kb on - strand, within BWI76_RS27025at 5606.658 kb on - strand, within BWI76_RS27025at 5606.767 kb on - strand, within BWI76_RS27025at 5606.872 kb on + strand, within BWI76_RS27025at 5606.942 kb on + strand, within BWI76_RS27025at 5606.960 kb on - strand, within BWI76_RS27025at 5607.067 kb on + strand, within BWI76_RS27025at 5607.075 kb on - strand, within BWI76_RS27025at 5607.131 kb on + strand, within BWI76_RS27025at 5607.226 kb on + strand, within BWI76_RS27025at 5607.234 kb on - strand, within BWI76_RS27025at 5607.401 kb on - strand, within BWI76_RS27025

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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5,603,990 + BWI76_RS27010 0.56 +1.0
5,603,998 - BWI76_RS27010 0.57 +0.0
5,604,043 + BWI76_RS27010 0.62 -0.3
5,604,053 + BWI76_RS27010 0.63 -0.6
5,604,056 - BWI76_RS27010 0.63 -0.7
5,604,061 - BWI76_RS27010 0.63 -0.2
5,604,061 - BWI76_RS27010 0.63 +0.9
5,604,061 - BWI76_RS27010 0.63 -0.3
5,604,203 - -0.1
5,604,210 + BWI76_RS27010 0.78 -0.2
5,604,364 - +0.2
5,604,570 + BWI76_RS27015 0.39 -0.3
5,604,594 + BWI76_RS27015 0.45 +1.2
5,604,684 + BWI76_RS27015 0.69 -0.9
5,604,759 + BWI76_RS27015 0.89 -0.9
5,604,814 + -1.1
5,604,814 + +0.6
5,604,814 + -1.0
5,604,814 + -0.7
5,604,822 - +0.4
5,604,822 - -0.9
5,604,822 - +1.0
5,604,822 - -0.3
5,604,822 - +1.1
5,604,893 + -1.9
5,605,154 + BWI76_RS27020 0.13 -1.1
5,605,330 - BWI76_RS27020 0.25 -0.8
5,605,402 + BWI76_RS27020 0.30 +0.1
5,605,429 - BWI76_RS27020 0.32 +0.9
5,605,510 + BWI76_RS27020 0.37 -0.4
5,605,518 - BWI76_RS27020 0.38 -0.0
5,605,549 + BWI76_RS27020 0.40 -1.3
5,605,845 + BWI76_RS27020 0.60 -2.0
5,606,189 - BWI76_RS27020 0.84 -0.3
5,606,209 + BWI76_RS27020 0.85 -0.1
5,606,217 - BWI76_RS27020 0.86 -0.5
5,606,217 - BWI76_RS27020 0.86 -0.9
5,606,266 + BWI76_RS27020 0.89 -0.3
5,606,351 + -0.1
5,606,357 + +0.2
5,606,357 + +0.2
5,606,365 - -0.3
5,606,391 + +1.8
5,606,399 - -0.1
5,606,414 - -0.2
5,606,458 + -0.4
5,606,458 + -0.9
5,606,513 - -0.1
5,606,573 + -0.8
5,606,573 + -0.2
5,606,575 - -0.3
5,606,593 - -0.9
5,606,608 - -0.5
5,606,645 - BWI76_RS27025 0.11 +0.7
5,606,658 - BWI76_RS27025 0.12 -0.3
5,606,767 - BWI76_RS27025 0.20 +0.9
5,606,872 + BWI76_RS27025 0.28 -1.8
5,606,942 + BWI76_RS27025 0.33 -1.1
5,606,960 - BWI76_RS27025 0.35 -0.2
5,607,067 + BWI76_RS27025 0.43 -0.5
5,607,075 - BWI76_RS27025 0.43 -0.2
5,607,131 + BWI76_RS27025 0.48 -0.2
5,607,226 + BWI76_RS27025 0.55 -0.0
5,607,234 - BWI76_RS27025 0.55 -0.1
5,607,401 - BWI76_RS27025 0.68 +0.0

Or see this region's nucleotide sequence