Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24665

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24660 and BWI76_RS24665 are separated by 219 nucleotidesBWI76_RS24665 and BWI76_RS24670 are separated by 37 nucleotides BWI76_RS24660: BWI76_RS24660 - autoinducer 2 ABC transporter ATP-binding protein LsrA, at 5,139,026 to 5,140,513 _RS24660 BWI76_RS24665: BWI76_RS24665 - LsrR family transcriptional regulator, at 5,140,733 to 5,141,704 _RS24665 BWI76_RS24670: BWI76_RS24670 - autoinducer-2 kinase, at 5,141,742 to 5,143,334 _RS24670 Position (kb) 5140 5141 5142Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5140.343 kb on + strand, within BWI76_RS24660at 5140.415 kb on - strandat 5140.494 kb on + strandat 5140.502 kb on + strandat 5140.506 kb on + strandat 5140.591 kb on - strandat 5140.846 kb on + strand, within BWI76_RS24665at 5140.846 kb on - strand, within BWI76_RS24665at 5141.088 kb on + strand, within BWI76_RS24665at 5141.126 kb on + strand, within BWI76_RS24665at 5141.143 kb on + strand, within BWI76_RS24665at 5141.438 kb on + strand, within BWI76_RS24665at 5141.707 kb on + strandat 5141.707 kb on + strandat 5141.707 kb on + strandat 5141.948 kb on - strand, within BWI76_RS24670at 5142.253 kb on - strand, within BWI76_RS24670at 5142.313 kb on - strand, within BWI76_RS24670at 5142.335 kb on + strand, within BWI76_RS24670at 5142.541 kb on + strand, within BWI76_RS24670

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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5,140,343 + BWI76_RS24660 0.89 -0.9
5,140,415 - +0.2
5,140,494 + +0.1
5,140,502 + +0.4
5,140,506 + +0.4
5,140,591 - -0.3
5,140,846 + BWI76_RS24665 0.12 +0.0
5,140,846 - BWI76_RS24665 0.12 +3.5
5,141,088 + BWI76_RS24665 0.37 -0.2
5,141,126 + BWI76_RS24665 0.40 -0.1
5,141,143 + BWI76_RS24665 0.42 -0.9
5,141,438 + BWI76_RS24665 0.73 +1.2
5,141,707 + +1.2
5,141,707 + -0.4
5,141,707 + -0.9
5,141,948 - BWI76_RS24670 0.13 -0.2
5,142,253 - BWI76_RS24670 0.32 -0.2
5,142,313 - BWI76_RS24670 0.36 -2.2
5,142,335 + BWI76_RS24670 0.37 +0.0
5,142,541 + BWI76_RS24670 0.50 -2.3

Or see this region's nucleotide sequence