Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23570 and BWI76_RS23575 are separated by 10 nucleotides BWI76_RS23575 and BWI76_RS23580 are separated by 12 nucleotides BWI76_RS23580 and BWI76_RS23585 are separated by 14 nucleotides
BWI76_RS23570: BWI76_RS23570 - fimbrial protein, at 4,914,988 to 4,917,624
_RS23570
BWI76_RS23575: BWI76_RS23575 - hypothetical protein, at 4,917,635 to 4,918,165
_RS23575
BWI76_RS23580: BWI76_RS23580 - hypothetical protein, at 4,918,178 to 4,918,678
_RS23580
BWI76_RS23585: BWI76_RS23585 - minor component of type 1 fimbriae, at 4,918,693 to 4,919,655
_RS23585
Position (kb)
4917
4918
4919 Strain fitness (log2 ratio)
-1
0
1 at 4917.120 kb on - strand, within BWI76_RS23570 at 4917.155 kb on - strand, within BWI76_RS23570 at 4917.231 kb on - strand, within BWI76_RS23570 at 4917.280 kb on - strand, within BWI76_RS23570 at 4917.320 kb on - strand, within BWI76_RS23570 at 4917.325 kb on - strand, within BWI76_RS23570 at 4917.325 kb on - strand, within BWI76_RS23570 at 4917.329 kb on + strand, within BWI76_RS23570 at 4917.483 kb on - strand at 4917.508 kb on + strand at 4917.656 kb on + strand at 4917.682 kb on - strand at 4918.012 kb on + strand, within BWI76_RS23575 at 4918.053 kb on + strand, within BWI76_RS23575 at 4918.063 kb on + strand at 4918.088 kb on + strand, within BWI76_RS23575 at 4918.196 kb on - strand at 4918.204 kb on - strand at 4918.346 kb on - strand, within BWI76_RS23580 at 4918.346 kb on - strand, within BWI76_RS23580 at 4918.463 kb on - strand, within BWI76_RS23580 at 4918.492 kb on + strand, within BWI76_RS23580 at 4918.661 kb on + strand at 4918.737 kb on + strand at 4918.737 kb on + strand at 4918.737 kb on + strand at 4918.737 kb on + strand at 4918.737 kb on + strand at 4918.740 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.785 kb on + strand at 4918.869 kb on + strand, within BWI76_RS23585 at 4918.891 kb on + strand, within BWI76_RS23585 at 4918.987 kb on + strand, within BWI76_RS23585 at 4919.144 kb on + strand, within BWI76_RS23585 at 4919.162 kb on - strand, within BWI76_RS23585 at 4919.165 kb on - strand, within BWI76_RS23585
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 4,917,120 - BWI76_RS23570 0.81 -0.9 4,917,155 - BWI76_RS23570 0.82 +0.1 4,917,231 - BWI76_RS23570 0.85 -0.4 4,917,280 - BWI76_RS23570 0.87 -0.6 4,917,320 - BWI76_RS23570 0.88 +0.4 4,917,325 - BWI76_RS23570 0.89 -0.8 4,917,325 - BWI76_RS23570 0.89 -0.3 4,917,329 + BWI76_RS23570 0.89 -0.0 4,917,483 - +0.4 4,917,508 + -0.5 4,917,656 + +0.5 4,917,682 - -0.0 4,918,012 + BWI76_RS23575 0.71 -1.1 4,918,053 + BWI76_RS23575 0.79 -0.6 4,918,063 + +1.2 4,918,088 + BWI76_RS23575 0.85 -0.6 4,918,196 - -0.1 4,918,204 - +0.2 4,918,346 - BWI76_RS23580 0.34 +0.5 4,918,346 - BWI76_RS23580 0.34 -0.2 4,918,463 - BWI76_RS23580 0.57 +0.1 4,918,492 + BWI76_RS23580 0.63 +0.0 4,918,661 + -0.3 4,918,737 + -0.1 4,918,737 + -0.7 4,918,737 + -0.3 4,918,737 + +1.2 4,918,737 + -0.3 4,918,740 - -0.8 4,918,745 - -0.8 4,918,745 - -0.4 4,918,745 - +0.4 4,918,745 - +0.5 4,918,745 - +0.0 4,918,745 - -0.7 4,918,745 - +0.0 4,918,785 + -0.4 4,918,869 + BWI76_RS23585 0.18 +0.2 4,918,891 + BWI76_RS23585 0.21 -0.4 4,918,987 + BWI76_RS23585 0.31 +0.3 4,919,144 + BWI76_RS23585 0.47 +0.4 4,919,162 - BWI76_RS23585 0.49 +0.2 4,919,165 - BWI76_RS23585 0.49 -1.0
Or see this region's nucleotide sequence