Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23445 and BWI76_RS23450 are separated by 130 nucleotides BWI76_RS23450 and BWI76_RS23455 are separated by 96 nucleotides BWI76_RS23455 and BWI76_RS23460 are separated by 110 nucleotides
BWI76_RS23445: BWI76_RS23445 - acetyl-CoA acetyltransferase, at 4,891,815 to 4,892,990
_RS23445
BWI76_RS23450: BWI76_RS23450 - LysR family transcriptional regulator, at 4,893,121 to 4,893,993
_RS23450
BWI76_RS23455: BWI76_RS23455 - Na(+)-translocating NADH-quinone reductase subunit E, at 4,894,090 to 4,894,578
_RS23455
BWI76_RS23460: BWI76_RS23460 - hypothetical protein, at 4,894,689 to 4,895,918
_RS23460
Position (kb)
4893
4894 Strain fitness (log2 ratio)
-1
0
1 at 4892.557 kb on - strand, within BWI76_RS23445 at 4892.703 kb on - strand, within BWI76_RS23445 at 4892.722 kb on + strand, within BWI76_RS23445 at 4892.766 kb on - strand, within BWI76_RS23445 at 4892.766 kb on - strand, within BWI76_RS23445 at 4892.766 kb on - strand, within BWI76_RS23445 at 4892.766 kb on - strand, within BWI76_RS23445 at 4892.766 kb on - strand, within BWI76_RS23445 at 4892.843 kb on + strand, within BWI76_RS23445 at 4892.851 kb on - strand, within BWI76_RS23445 at 4892.901 kb on + strand at 4893.116 kb on + strand at 4893.350 kb on + strand, within BWI76_RS23450 at 4893.353 kb on - strand, within BWI76_RS23450 at 4893.393 kb on - strand, within BWI76_RS23450 at 4893.416 kb on - strand, within BWI76_RS23450 at 4893.440 kb on + strand, within BWI76_RS23450 at 4893.440 kb on + strand, within BWI76_RS23450 at 4893.440 kb on + strand, within BWI76_RS23450 at 4893.440 kb on + strand, within BWI76_RS23450 at 4893.448 kb on - strand, within BWI76_RS23450 at 4893.453 kb on - strand at 4893.699 kb on + strand, within BWI76_RS23450 at 4893.714 kb on - strand, within BWI76_RS23450 at 4893.725 kb on - strand at 4893.790 kb on + strand, within BWI76_RS23450 at 4893.790 kb on + strand, within BWI76_RS23450 at 4893.791 kb on + strand, within BWI76_RS23450 at 4893.798 kb on - strand, within BWI76_RS23450 at 4893.798 kb on - strand, within BWI76_RS23450 at 4894.081 kb on + strand at 4894.110 kb on + strand at 4894.206 kb on - strand, within BWI76_RS23455 at 4894.442 kb on + strand, within BWI76_RS23455 at 4894.490 kb on + strand, within BWI76_RS23455 at 4894.806 kb on - strand at 4894.989 kb on + strand, within BWI76_RS23460
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 4,892,557 - BWI76_RS23445 0.63 -0.0 4,892,703 - BWI76_RS23445 0.76 +0.5 4,892,722 + BWI76_RS23445 0.77 -1.3 4,892,766 - BWI76_RS23445 0.81 -0.5 4,892,766 - BWI76_RS23445 0.81 +0.6 4,892,766 - BWI76_RS23445 0.81 -0.1 4,892,766 - BWI76_RS23445 0.81 -0.2 4,892,766 - BWI76_RS23445 0.81 +0.0 4,892,843 + BWI76_RS23445 0.87 +1.5 4,892,851 - BWI76_RS23445 0.88 -0.5 4,892,901 + +0.3 4,893,116 + -0.6 4,893,350 + BWI76_RS23450 0.26 -0.1 4,893,353 - BWI76_RS23450 0.27 +0.5 4,893,393 - BWI76_RS23450 0.31 +0.2 4,893,416 - BWI76_RS23450 0.34 +0.1 4,893,440 + BWI76_RS23450 0.37 -0.9 4,893,440 + BWI76_RS23450 0.37 +1.1 4,893,440 + BWI76_RS23450 0.37 +0.1 4,893,440 + BWI76_RS23450 0.37 +0.3 4,893,448 - BWI76_RS23450 0.37 +0.0 4,893,453 - +1.0 4,893,699 + BWI76_RS23450 0.66 -0.0 4,893,714 - BWI76_RS23450 0.68 +0.3 4,893,725 - +0.5 4,893,790 + BWI76_RS23450 0.77 +0.4 4,893,790 + BWI76_RS23450 0.77 +0.1 4,893,791 + BWI76_RS23450 0.77 +0.3 4,893,798 - BWI76_RS23450 0.78 -0.4 4,893,798 - BWI76_RS23450 0.78 -0.2 4,894,081 + -1.5 4,894,110 + -0.1 4,894,206 - BWI76_RS23455 0.24 -1.5 4,894,442 + BWI76_RS23455 0.72 +0.2 4,894,490 + BWI76_RS23455 0.82 +0.4 4,894,806 - +0.3 4,894,989 + BWI76_RS23460 0.24 -0.3
Or see this region's nucleotide sequence