Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18545

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18535 and BWI76_RS18540 are separated by 170 nucleotidesBWI76_RS18540 and BWI76_RS18545 are separated by 132 nucleotidesBWI76_RS18545 and BWI76_RS18550 are separated by 827 nucleotides BWI76_RS18535: BWI76_RS18535 - alpha/beta hydrolase, at 3,846,345 to 3,847,886 _RS18535 BWI76_RS18540: BWI76_RS18540 - signal transduction protein PmrD, at 3,848,057 to 3,848,314 _RS18540 BWI76_RS18545: BWI76_RS18545 - AMP nucleosidase, at 3,848,447 to 3,849,901 _RS18545 BWI76_RS18550: BWI76_RS18550 - tRNA-Asn, at 3,850,729 to 3,850,804 _RS18550 Position (kb) 3848 3849 3850Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3847.511 kb on - strand, within BWI76_RS18535at 3847.568 kb on - strand, within BWI76_RS18535at 3847.720 kb on + strand, within BWI76_RS18535at 3847.732 kb on - strandat 3847.737 kb on + strandat 3847.737 kb on - strandat 3847.742 kb on + strandat 3847.745 kb on - strandat 3847.745 kb on - strandat 3847.750 kb on - strandat 3847.849 kb on + strandat 3847.931 kb on + strandat 3847.998 kb on - strandat 3848.033 kb on + strandat 3848.041 kb on - strandat 3848.041 kb on - strandat 3848.041 kb on - strandat 3848.041 kb on - strandat 3848.046 kb on + strandat 3848.089 kb on + strand, within BWI76_RS18540at 3848.095 kb on + strand, within BWI76_RS18540at 3848.097 kb on - strand, within BWI76_RS18540at 3848.103 kb on - strand, within BWI76_RS18540at 3848.103 kb on - strand, within BWI76_RS18540at 3848.114 kb on + strand, within BWI76_RS18540at 3848.120 kb on - strand, within BWI76_RS18540at 3848.122 kb on - strand, within BWI76_RS18540at 3848.177 kb on - strand, within BWI76_RS18540at 3848.181 kb on + strand, within BWI76_RS18540at 3848.207 kb on + strand, within BWI76_RS18540at 3848.383 kb on + strandat 3848.399 kb on + strandat 3848.403 kb on - strandat 3848.480 kb on - strandat 3848.480 kb on - strandat 3848.480 kb on - strandat 3848.530 kb on + strandat 3848.530 kb on + strandat 3848.530 kb on + strandat 3848.673 kb on + strand, within BWI76_RS18545at 3848.715 kb on - strand, within BWI76_RS18545at 3848.822 kb on - strand, within BWI76_RS18545at 3849.103 kb on - strand, within BWI76_RS18545at 3849.584 kb on - strand, within BWI76_RS18545at 3849.716 kb on - strand, within BWI76_RS18545at 3849.821 kb on - strandat 3849.846 kb on - strandat 3849.865 kb on - strandat 3849.869 kb on - strandat 3849.887 kb on + strandat 3849.895 kb on + strandat 3849.902 kb on + strandat 3849.907 kb on + strandat 3849.907 kb on + strandat 3849.915 kb on - strandat 3849.915 kb on - strandat 3849.915 kb on - strandat 3849.915 kb on - strandat 3849.915 kb on - strandat 3849.917 kb on + strandat 3849.931 kb on + strandat 3849.931 kb on - strandat 3849.952 kb on + strandat 3849.959 kb on - strandat 3849.960 kb on - strandat 3849.965 kb on + strandat 3849.965 kb on + strandat 3849.965 kb on + strandat 3849.965 kb on + strandat 3849.965 kb on + strandat 3849.965 kb on + strandat 3849.965 kb on + strandat 3849.973 kb on - strandat 3849.973 kb on - strandat 3849.973 kb on - strandat 3849.973 kb on - strandat 3849.973 kb on - strandat 3850.008 kb on + strandat 3850.011 kb on - strandat 3850.219 kb on - strandat 3850.323 kb on + strandat 3850.329 kb on + strandat 3850.329 kb on + strandat 3850.336 kb on + strandat 3850.336 kb on + strandat 3850.342 kb on - strandat 3850.344 kb on - strandat 3850.344 kb on - strandat 3850.344 kb on - strandat 3850.348 kb on + strandat 3850.353 kb on + strandat 3850.357 kb on - strandat 3850.361 kb on - strandat 3850.375 kb on + strandat 3850.412 kb on + strandat 3850.412 kb on + strandat 3850.420 kb on - strandat 3850.420 kb on - strandat 3850.435 kb on - strandat 3850.446 kb on + strandat 3850.459 kb on - strandat 3850.471 kb on + strandat 3850.479 kb on - strandat 3850.498 kb on + strandat 3850.550 kb on - strandat 3850.573 kb on + strandat 3850.573 kb on + strandat 3850.573 kb on + strandat 3850.581 kb on - strandat 3850.592 kb on + strandat 3850.627 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.636 kb on + strandat 3850.638 kb on + strandat 3850.638 kb on + strandat 3850.640 kb on - strandat 3850.640 kb on - strandat 3850.640 kb on - strandat 3850.640 kb on - strandat 3850.640 kb on - strandat 3850.640 kb on - strandat 3850.640 kb on - strandat 3850.640 kb on - strandat 3850.641 kb on + strandat 3850.641 kb on - strandat 3850.644 kb on - strandat 3850.648 kb on + strandat 3850.648 kb on + strandat 3850.753 kb on - strand, within BWI76_RS18550

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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3,847,511 - BWI76_RS18535 0.76 -0.4
3,847,568 - BWI76_RS18535 0.79 -0.9
3,847,720 + BWI76_RS18535 0.89 +1.0
3,847,732 - +1.3
3,847,737 + -1.2
3,847,737 - -0.8
3,847,742 + +0.1
3,847,745 - +0.3
3,847,745 - +0.8
3,847,750 - -1.1
3,847,849 + +0.3
3,847,931 + -1.7
3,847,998 - +0.2
3,848,033 + -0.1
3,848,041 - -0.3
3,848,041 - +0.1
3,848,041 - -1.0
3,848,041 - +0.4
3,848,046 + +0.1
3,848,089 + BWI76_RS18540 0.12 -0.7
3,848,095 + BWI76_RS18540 0.15 -0.2
3,848,097 - BWI76_RS18540 0.16 -1.2
3,848,103 - BWI76_RS18540 0.18 -0.5
3,848,103 - BWI76_RS18540 0.18 -0.8
3,848,114 + BWI76_RS18540 0.22 +0.0
3,848,120 - BWI76_RS18540 0.24 +0.1
3,848,122 - BWI76_RS18540 0.25 -1.0
3,848,177 - BWI76_RS18540 0.47 -0.6
3,848,181 + BWI76_RS18540 0.48 +1.2
3,848,207 + BWI76_RS18540 0.58 +0.1
3,848,383 + -0.6
3,848,399 + -0.5
3,848,403 - -0.8
3,848,480 - -0.1
3,848,480 - +1.0
3,848,480 - -0.7
3,848,530 + -0.6
3,848,530 + +2.1
3,848,530 + -0.1
3,848,673 + BWI76_RS18545 0.16 +4.9
3,848,715 - BWI76_RS18545 0.18 +0.5
3,848,822 - BWI76_RS18545 0.26 -0.1
3,849,103 - BWI76_RS18545 0.45 -0.2
3,849,584 - BWI76_RS18545 0.78 -1.5
3,849,716 - BWI76_RS18545 0.87 +0.7
3,849,821 - -0.7
3,849,846 - -0.2
3,849,865 - -1.5
3,849,869 - +0.4
3,849,887 + -0.4
3,849,895 + +0.3
3,849,902 + -0.4
3,849,907 + -0.5
3,849,907 + -0.5
3,849,915 - -0.5
3,849,915 - -0.4
3,849,915 - -2.7
3,849,915 - -0.6
3,849,915 - +0.9
3,849,917 + -0.3
3,849,931 + -0.4
3,849,931 - +0.9
3,849,952 + +1.2
3,849,959 - +0.1
3,849,960 - -0.4
3,849,965 + +0.3
3,849,965 + +0.4
3,849,965 + -1.8
3,849,965 + -0.4
3,849,965 + +0.2
3,849,965 + +0.1
3,849,965 + +2.0
3,849,973 - +0.0
3,849,973 - -0.2
3,849,973 - +0.7
3,849,973 - +0.9
3,849,973 - -0.0
3,850,008 + +0.7
3,850,011 - -0.1
3,850,219 - -0.5
3,850,323 + -0.5
3,850,329 + +0.8
3,850,329 + +0.8
3,850,336 + -0.1
3,850,336 + -1.2
3,850,342 - +0.9
3,850,344 - -0.8
3,850,344 - -0.1
3,850,344 - -0.5
3,850,348 + -0.6
3,850,353 + -0.9
3,850,357 - -0.9
3,850,361 - -0.1
3,850,375 + -0.2
3,850,412 + +1.6
3,850,412 + -0.5
3,850,420 - +0.7
3,850,420 - -0.1
3,850,435 - +0.8
3,850,446 + -1.9
3,850,459 - +0.2
3,850,471 + -0.2
3,850,479 - +1.2
3,850,498 + -0.3
3,850,550 - -0.2
3,850,573 + -1.2
3,850,573 + -0.4
3,850,573 + -0.0
3,850,581 - +0.5
3,850,592 + -0.9
3,850,627 + +0.2
3,850,632 + -0.6
3,850,632 + -1.1
3,850,632 + +0.2
3,850,632 + +0.3
3,850,632 + -0.5
3,850,632 + -0.2
3,850,632 + -0.6
3,850,632 + -0.3
3,850,632 + -0.6
3,850,632 + -0.5
3,850,632 + -0.3
3,850,632 + -0.5
3,850,632 + -0.2
3,850,636 + -0.8
3,850,638 + -0.7
3,850,638 + +0.0
3,850,640 - -1.1
3,850,640 - +0.2
3,850,640 - -1.0
3,850,640 - -0.8
3,850,640 - -0.6
3,850,640 - -0.2
3,850,640 - +0.6
3,850,640 - +0.1
3,850,641 + +0.5
3,850,641 - +0.0
3,850,644 - +0.8
3,850,648 + +0.9
3,850,648 + -0.3
3,850,753 - BWI76_RS18550 0.32 +0.0

Or see this region's nucleotide sequence