Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16340 and BWI76_RS16345 are separated by 220 nucleotides BWI76_RS16345 and BWI76_RS16350 are separated by 79 nucleotides BWI76_RS16350 and BWI76_RS16355 are separated by 77 nucleotides
BWI76_RS16340: BWI76_RS16340 - aryl-phospho-beta-D-glucosidase, at 3,391,198 to 3,392,568
_RS16340
BWI76_RS16345: BWI76_RS16345 - nucleoid-associated protein, at 3,392,789 to 3,393,004
_RS16345
BWI76_RS16350: BWI76_RS16350 - membrane protein, at 3,393,084 to 3,393,524
_RS16350
BWI76_RS16355: BWI76_RS16355 - electron transport complex subunit A, at 3,393,602 to 3,394,183
_RS16355
Position (kb)
3392
3393
3394 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3392.157 kb on - strand, within BWI76_RS16340 at 3392.193 kb on + strand, within BWI76_RS16340 at 3392.214 kb on + strand, within BWI76_RS16340 at 3392.354 kb on - strand, within BWI76_RS16340 at 3392.390 kb on + strand, within BWI76_RS16340 at 3392.393 kb on - strand, within BWI76_RS16340 at 3392.398 kb on - strand, within BWI76_RS16340 at 3392.413 kb on - strand, within BWI76_RS16340 at 3392.414 kb on + strand, within BWI76_RS16340 at 3392.415 kb on - strand, within BWI76_RS16340 at 3392.472 kb on + strand at 3392.480 kb on - strand at 3392.562 kb on + strand at 3392.562 kb on + strand at 3392.617 kb on - strand at 3392.718 kb on + strand at 3392.723 kb on + strand at 3392.728 kb on + strand at 3392.728 kb on + strand at 3392.731 kb on - strand at 3392.736 kb on + strand at 3392.736 kb on - strand at 3392.743 kb on + strand at 3392.863 kb on + strand, within BWI76_RS16345 at 3392.871 kb on - strand, within BWI76_RS16345 at 3392.871 kb on - strand, within BWI76_RS16345 at 3392.873 kb on + strand, within BWI76_RS16345 at 3392.883 kb on + strand, within BWI76_RS16345 at 3392.913 kb on + strand, within BWI76_RS16345 at 3392.931 kb on - strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.980 kb on - strand, within BWI76_RS16345 at 3392.982 kb on - strand, within BWI76_RS16345 at 3392.982 kb on - strand, within BWI76_RS16345 at 3393.006 kb on - strand at 3393.029 kb on + strand at 3393.029 kb on + strand at 3393.037 kb on - strand at 3393.145 kb on + strand, within BWI76_RS16350 at 3393.155 kb on + strand, within BWI76_RS16350 at 3393.158 kb on - strand, within BWI76_RS16350 at 3393.209 kb on + strand, within BWI76_RS16350 at 3393.219 kb on - strand, within BWI76_RS16350 at 3393.243 kb on + strand, within BWI76_RS16350 at 3393.254 kb on + strand, within BWI76_RS16350 at 3393.293 kb on - strand, within BWI76_RS16350 at 3393.295 kb on - strand, within BWI76_RS16350 at 3393.298 kb on - strand, within BWI76_RS16350 at 3393.383 kb on - strand, within BWI76_RS16350 at 3393.533 kb on + strand at 3393.551 kb on - strand at 3393.672 kb on - strand, within BWI76_RS16355 at 3393.681 kb on + strand, within BWI76_RS16355 at 3393.713 kb on + strand, within BWI76_RS16355 at 3393.970 kb on + strand, within BWI76_RS16355
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 3,392,157 - BWI76_RS16340 0.70 -1.0 3,392,193 + BWI76_RS16340 0.73 +0.3 3,392,214 + BWI76_RS16340 0.74 +0.9 3,392,354 - BWI76_RS16340 0.84 -0.0 3,392,390 + BWI76_RS16340 0.87 +0.4 3,392,393 - BWI76_RS16340 0.87 +0.3 3,392,398 - BWI76_RS16340 0.88 +0.9 3,392,413 - BWI76_RS16340 0.89 -0.2 3,392,414 + BWI76_RS16340 0.89 +0.2 3,392,415 - BWI76_RS16340 0.89 -0.9 3,392,472 + +0.7 3,392,480 - +2.5 3,392,562 + +0.6 3,392,562 + -0.1 3,392,617 - +0.8 3,392,718 + -0.2 3,392,723 + -0.1 3,392,728 + +0.3 3,392,728 + +2.1 3,392,731 - +0.9 3,392,736 + -0.3 3,392,736 - +0.4 3,392,743 + -0.3 3,392,863 + BWI76_RS16345 0.34 -0.3 3,392,871 - BWI76_RS16345 0.38 +0.1 3,392,871 - BWI76_RS16345 0.38 +0.0 3,392,873 + BWI76_RS16345 0.39 +0.0 3,392,883 + BWI76_RS16345 0.44 +1.0 3,392,913 + BWI76_RS16345 0.57 +1.0 3,392,931 - BWI76_RS16345 0.66 +0.5 3,392,974 + BWI76_RS16345 0.86 +3.8 3,392,974 + BWI76_RS16345 0.86 +0.9 3,392,974 + BWI76_RS16345 0.86 +0.7 3,392,974 + BWI76_RS16345 0.86 -0.7 3,392,974 + BWI76_RS16345 0.86 +4.4 3,392,974 + BWI76_RS16345 0.86 +0.1 3,392,974 + BWI76_RS16345 0.86 +0.7 3,392,974 + BWI76_RS16345 0.86 +0.0 3,392,974 + BWI76_RS16345 0.86 +0.9 3,392,974 + BWI76_RS16345 0.86 +1.6 3,392,974 + BWI76_RS16345 0.86 +0.5 3,392,980 - BWI76_RS16345 0.88 -0.1 3,392,982 - BWI76_RS16345 0.89 +1.2 3,392,982 - BWI76_RS16345 0.89 +0.7 3,393,006 - +0.7 3,393,029 + +1.3 3,393,029 + -1.5 3,393,037 - -0.3 3,393,145 + BWI76_RS16350 0.14 -0.3 3,393,155 + BWI76_RS16350 0.16 -0.2 3,393,158 - BWI76_RS16350 0.17 -0.2 3,393,209 + BWI76_RS16350 0.28 -0.5 3,393,219 - BWI76_RS16350 0.31 +1.6 3,393,243 + BWI76_RS16350 0.36 -0.4 3,393,254 + BWI76_RS16350 0.39 +1.0 3,393,293 - BWI76_RS16350 0.47 +0.0 3,393,295 - BWI76_RS16350 0.48 -0.2 3,393,298 - BWI76_RS16350 0.49 -0.2 3,393,383 - BWI76_RS16350 0.68 -0.4 3,393,533 + -0.8 3,393,551 - +3.1 3,393,672 - BWI76_RS16355 0.12 -0.0 3,393,681 + BWI76_RS16355 0.14 +1.3 3,393,713 + BWI76_RS16355 0.19 -0.4 3,393,970 + BWI76_RS16355 0.63 -0.5
Or see this region's nucleotide sequence