Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13260

Experiment: LB in EcoFAB_3.5mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS13250 and BWI76_RS13255 are separated by 169 nucleotidesBWI76_RS13255 and BWI76_RS13260 are separated by 22 nucleotidesBWI76_RS13260 and BWI76_RS13265 are separated by 51 nucleotidesBWI76_RS13265 and BWI76_RS13270 are separated by 173 nucleotides BWI76_RS13250: BWI76_RS13250 - cytochrome b561, at 2,763,623 to 2,764,150 _RS13250 BWI76_RS13255: BWI76_RS13255 - hypothetical protein, at 2,764,320 to 2,764,595 _RS13255 BWI76_RS13260: BWI76_RS13260 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 2,764,618 to 2,765,736 _RS13260 BWI76_RS13265: BWI76_RS13265 - hypothetical protein, at 2,765,788 to 2,766,066 _RS13265 BWI76_RS13270: BWI76_RS13270 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 2,766,240 to 2,768,612 _RS13270 Position (kb) 2764 2765 2766Strain fitness (log2 ratio) -1 0 1 2 3 4at 2763.838 kb on + strand, within BWI76_RS13250at 2764.748 kb on + strand, within BWI76_RS13260at 2764.756 kb on - strand, within BWI76_RS13260at 2764.792 kb on + strand, within BWI76_RS13260at 2765.157 kb on - strand, within BWI76_RS13260at 2765.162 kb on - strand, within BWI76_RS13260at 2765.249 kb on - strand, within BWI76_RS13260at 2765.256 kb on - strand, within BWI76_RS13260at 2765.340 kb on + strand, within BWI76_RS13260at 2765.572 kb on + strand, within BWI76_RS13260at 2765.654 kb on - strandat 2765.840 kb on - strand, within BWI76_RS13265at 2765.883 kb on - strand, within BWI76_RS13265at 2765.883 kb on - strand, within BWI76_RS13265at 2765.998 kb on + strand, within BWI76_RS13265

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
remove
2,763,838 + BWI76_RS13250 0.41 +0.1
2,764,748 + BWI76_RS13260 0.12 +0.0
2,764,756 - BWI76_RS13260 0.12 +1.1
2,764,792 + BWI76_RS13260 0.16 +1.0
2,765,157 - BWI76_RS13260 0.48 -0.7
2,765,162 - BWI76_RS13260 0.49 -0.3
2,765,249 - BWI76_RS13260 0.56 -0.3
2,765,256 - BWI76_RS13260 0.57 +3.9
2,765,340 + BWI76_RS13260 0.65 -0.1
2,765,572 + BWI76_RS13260 0.85 +0.8
2,765,654 - -0.5
2,765,840 - BWI76_RS13265 0.19 +0.6
2,765,883 - BWI76_RS13265 0.34 -0.6
2,765,883 - BWI76_RS13265 0.34 -0.0
2,765,998 + BWI76_RS13265 0.75 -0.3

Or see this region's nucleotide sequence