Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12905 and BWI76_RS12910 are separated by 348 nucleotides BWI76_RS12910 and BWI76_RS12915 are separated by 17 nucleotides
BWI76_RS12905: BWI76_RS12905 - LysR family transcriptional regulator, at 2,688,620 to 2,689,588
_RS12905
BWI76_RS12910: BWI76_RS12910 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 2,689,937 to 2,690,743
_RS12910
BWI76_RS12915: BWI76_RS12915 - 4-hydroxyphenylacetate permease, at 2,690,761 to 2,692,134
_RS12915
Position (kb)
2689
2690
2691 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2688.981 kb on + strand, within BWI76_RS12905 at 2688.989 kb on - strand, within BWI76_RS12905 at 2688.989 kb on - strand, within BWI76_RS12905 at 2689.008 kb on - strand, within BWI76_RS12905 at 2689.014 kb on + strand, within BWI76_RS12905 at 2689.016 kb on + strand, within BWI76_RS12905 at 2689.024 kb on + strand, within BWI76_RS12905 at 2689.028 kb on - strand, within BWI76_RS12905 at 2689.031 kb on + strand, within BWI76_RS12905 at 2689.039 kb on + strand, within BWI76_RS12905 at 2689.039 kb on + strand, within BWI76_RS12905 at 2689.047 kb on - strand, within BWI76_RS12905 at 2689.047 kb on - strand, within BWI76_RS12905 at 2689.047 kb on - strand, within BWI76_RS12905 at 2689.047 kb on - strand, within BWI76_RS12905 at 2689.106 kb on - strand, within BWI76_RS12905 at 2689.106 kb on - strand, within BWI76_RS12905 at 2689.106 kb on - strand, within BWI76_RS12905 at 2689.108 kb on + strand, within BWI76_RS12905 at 2689.108 kb on + strand, within BWI76_RS12905 at 2689.119 kb on + strand, within BWI76_RS12905 at 2689.121 kb on + strand, within BWI76_RS12905 at 2689.126 kb on + strand, within BWI76_RS12905 at 2689.126 kb on + strand, within BWI76_RS12905 at 2689.127 kb on - strand, within BWI76_RS12905 at 2689.131 kb on + strand, within BWI76_RS12905 at 2689.207 kb on + strand, within BWI76_RS12905 at 2689.265 kb on + strand, within BWI76_RS12905 at 2689.369 kb on - strand at 2689.506 kb on + strand at 2689.509 kb on - strand at 2689.539 kb on - strand at 2689.751 kb on - strand at 2689.758 kb on - strand at 2689.870 kb on + strand at 2689.870 kb on + strand at 2689.870 kb on + strand at 2689.870 kb on + strand at 2689.870 kb on + strand at 2689.878 kb on - strand at 2689.878 kb on - strand at 2689.883 kb on + strand at 2689.911 kb on - strand at 2689.920 kb on + strand at 2689.920 kb on + strand at 2689.928 kb on - strand at 2690.001 kb on + strand at 2690.010 kb on + strand at 2690.017 kb on + strand at 2690.067 kb on + strand, within BWI76_RS12910 at 2690.149 kb on - strand, within BWI76_RS12910 at 2690.251 kb on - strand, within BWI76_RS12910 at 2690.780 kb on - strand at 2690.823 kb on + strand at 2690.978 kb on - strand, within BWI76_RS12915 at 2691.044 kb on - strand, within BWI76_RS12915 at 2691.073 kb on + strand, within BWI76_RS12915 at 2691.073 kb on + strand, within BWI76_RS12915 at 2691.369 kb on + strand, within BWI76_RS12915 at 2691.714 kb on + strand, within BWI76_RS12915
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 2,688,981 + BWI76_RS12905 0.37 -0.1 2,688,989 - BWI76_RS12905 0.38 -0.9 2,688,989 - BWI76_RS12905 0.38 +0.4 2,689,008 - BWI76_RS12905 0.40 +0.1 2,689,014 + BWI76_RS12905 0.41 -0.4 2,689,016 + BWI76_RS12905 0.41 -0.2 2,689,024 + BWI76_RS12905 0.42 +0.6 2,689,028 - BWI76_RS12905 0.42 -0.6 2,689,031 + BWI76_RS12905 0.42 -0.8 2,689,039 + BWI76_RS12905 0.43 -0.4 2,689,039 + BWI76_RS12905 0.43 -0.0 2,689,047 - BWI76_RS12905 0.44 -0.8 2,689,047 - BWI76_RS12905 0.44 -0.3 2,689,047 - BWI76_RS12905 0.44 +0.7 2,689,047 - BWI76_RS12905 0.44 -0.4 2,689,106 - BWI76_RS12905 0.50 -0.2 2,689,106 - BWI76_RS12905 0.50 -0.2 2,689,106 - BWI76_RS12905 0.50 -0.1 2,689,108 + BWI76_RS12905 0.50 -0.7 2,689,108 + BWI76_RS12905 0.50 -0.2 2,689,119 + BWI76_RS12905 0.51 +1.2 2,689,121 + BWI76_RS12905 0.52 -0.0 2,689,126 + BWI76_RS12905 0.52 +0.6 2,689,126 + BWI76_RS12905 0.52 -0.1 2,689,127 - BWI76_RS12905 0.52 +0.3 2,689,131 + BWI76_RS12905 0.53 +0.5 2,689,207 + BWI76_RS12905 0.61 -0.3 2,689,265 + BWI76_RS12905 0.67 +1.0 2,689,369 - -0.2 2,689,506 + +2.6 2,689,509 - -0.2 2,689,539 - -0.9 2,689,751 - -1.4 2,689,758 - +0.1 2,689,870 + -0.4 2,689,870 + -0.2 2,689,870 + -2.1 2,689,870 + -0.4 2,689,870 + -0.0 2,689,878 - +1.7 2,689,878 - -0.8 2,689,883 + +2.7 2,689,911 - -0.1 2,689,920 + -0.7 2,689,920 + -0.4 2,689,928 - -0.1 2,690,001 + -0.3 2,690,010 + +0.3 2,690,017 + -1.1 2,690,067 + BWI76_RS12910 0.16 -2.1 2,690,149 - BWI76_RS12910 0.26 -0.7 2,690,251 - BWI76_RS12910 0.39 -0.3 2,690,780 - +0.4 2,690,823 + -0.4 2,690,978 - BWI76_RS12915 0.16 -0.2 2,691,044 - BWI76_RS12915 0.21 +4.7 2,691,073 + BWI76_RS12915 0.23 -0.1 2,691,073 + BWI76_RS12915 0.23 -0.2 2,691,369 + BWI76_RS12915 0.44 -0.3 2,691,714 + BWI76_RS12915 0.69 +0.2
Or see this region's nucleotide sequence