Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10840

Experiment: LB in EcoFAB_3.5mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS10830 and BWI76_RS10835 are separated by 50 nucleotidesBWI76_RS10835 and BWI76_RS10840 are separated by 155 nucleotidesBWI76_RS10840 and BWI76_RS10845 are separated by 122 nucleotidesBWI76_RS10845 and BWI76_RS10850 overlap by 4 nucleotides BWI76_RS10830: BWI76_RS10830 - phosphate starvation-inducible protein PhoH, at 2,288,942 to 2,290,006 _RS10830 BWI76_RS10835: BWI76_RS10835 - hypothetical protein, at 2,290,057 to 2,290,350 _RS10835 BWI76_RS10840: BWI76_RS10840 - membrane protein, at 2,290,506 to 2,291,294 _RS10840 BWI76_RS10845: BWI76_RS10845 - DNA-binding response regulator, at 2,291,417 to 2,292,112 _RS10845 BWI76_RS10850: BWI76_RS10850 - two-component sensor histidine kinase, at 2,292,109 to 2,293,305 _RS10850 Position (kb) 2290 2291 2292Strain fitness (log2 ratio) -2 -1 0 1at 2289.537 kb on - strand, within BWI76_RS10830at 2289.668 kb on + strand, within BWI76_RS10830at 2289.708 kb on - strand, within BWI76_RS10830at 2289.997 kb on + strandat 2290.057 kb on + strandat 2290.065 kb on - strandat 2290.082 kb on - strandat 2290.159 kb on + strand, within BWI76_RS10835at 2290.566 kb on + strandat 2290.618 kb on - strand, within BWI76_RS10840at 2290.642 kb on + strand, within BWI76_RS10840at 2290.642 kb on + strand, within BWI76_RS10840at 2290.652 kb on + strand, within BWI76_RS10840at 2290.846 kb on + strand, within BWI76_RS10840at 2291.271 kb on - strandat 2291.536 kb on + strand, within BWI76_RS10845at 2291.544 kb on - strand, within BWI76_RS10845at 2291.617 kb on - strand, within BWI76_RS10845at 2291.719 kb on + strand, within BWI76_RS10845at 2291.720 kb on + strand, within BWI76_RS10845at 2292.001 kb on - strand, within BWI76_RS10845at 2292.097 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
remove
2,289,537 - BWI76_RS10830 0.56 +0.0
2,289,668 + BWI76_RS10830 0.68 -0.3
2,289,708 - BWI76_RS10830 0.72 -0.3
2,289,997 + -0.4
2,290,057 + +1.2
2,290,065 - +0.4
2,290,082 - -1.0
2,290,159 + BWI76_RS10835 0.35 -0.3
2,290,566 + +0.1
2,290,618 - BWI76_RS10840 0.14 +1.2
2,290,642 + BWI76_RS10840 0.17 +1.2
2,290,642 + BWI76_RS10840 0.17 +0.4
2,290,652 + BWI76_RS10840 0.19 +0.6
2,290,846 + BWI76_RS10840 0.43 -1.2
2,291,271 - +0.6
2,291,536 + BWI76_RS10845 0.17 +0.7
2,291,544 - BWI76_RS10845 0.18 +0.1
2,291,617 - BWI76_RS10845 0.29 -0.6
2,291,719 + BWI76_RS10845 0.43 -0.6
2,291,720 + BWI76_RS10845 0.44 +0.5
2,292,001 - BWI76_RS10845 0.84 -0.6
2,292,097 - -1.8

Or see this region's nucleotide sequence