Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07500

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07495 and BWI76_RS07500 are separated by 69 nucleotidesBWI76_RS07500 and BWI76_RS07505 are separated by 13 nucleotides BWI76_RS07495: BWI76_RS07495 - carbonate dehydratase, at 1,581,803 to 1,584,526 _RS07495 BWI76_RS07500: BWI76_RS07500 - RND transporter MFP subunit, at 1,584,596 to 1,585,675 _RS07500 BWI76_RS07505: BWI76_RS07505 - hydrophobe/amphiphile efflux-1 family RND transporter, at 1,585,689 to 1,588,781 _RS07505 Position (kb) 1584 1585 1586Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1583.675 kb on - strand, within BWI76_RS07495at 1583.697 kb on - strand, within BWI76_RS07495at 1584.078 kb on - strand, within BWI76_RS07495at 1584.085 kb on - strand, within BWI76_RS07495at 1584.258 kb on + strandat 1584.258 kb on - strandat 1584.309 kb on + strandat 1584.309 kb on + strandat 1584.317 kb on - strandat 1584.674 kb on + strandat 1584.760 kb on - strand, within BWI76_RS07500at 1584.862 kb on + strand, within BWI76_RS07500at 1584.862 kb on + strand, within BWI76_RS07500at 1584.901 kb on - strand, within BWI76_RS07500at 1585.379 kb on + strand, within BWI76_RS07500at 1585.525 kb on + strand, within BWI76_RS07500at 1585.608 kb on - strandat 1585.735 kb on - strandat 1585.739 kb on + strandat 1585.771 kb on + strandat 1585.967 kb on - strandat 1586.131 kb on - strand, within BWI76_RS07505at 1586.406 kb on - strand, within BWI76_RS07505

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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1,583,675 - BWI76_RS07495 0.69 -0.5
1,583,697 - BWI76_RS07495 0.70 -0.1
1,584,078 - BWI76_RS07495 0.84 -0.2
1,584,085 - BWI76_RS07495 0.84 -0.3
1,584,258 + -0.8
1,584,258 - +0.4
1,584,309 + -0.8
1,584,309 + -2.4
1,584,317 - +2.7
1,584,674 + +2.9
1,584,760 - BWI76_RS07500 0.15 -0.4
1,584,862 + BWI76_RS07500 0.25 -0.9
1,584,862 + BWI76_RS07500 0.25 -1.5
1,584,901 - BWI76_RS07500 0.28 -1.4
1,585,379 + BWI76_RS07500 0.72 -0.4
1,585,525 + BWI76_RS07500 0.86 -1.1
1,585,608 - -0.0
1,585,735 - +0.2
1,585,739 + -0.2
1,585,771 + -1.3
1,585,967 - -0.5
1,586,131 - BWI76_RS07505 0.14 -1.1
1,586,406 - BWI76_RS07505 0.23 -0.9

Or see this region's nucleotide sequence