Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07495 and BWI76_RS07500 are separated by 69 nucleotides BWI76_RS07500 and BWI76_RS07505 are separated by 13 nucleotides
BWI76_RS07495: BWI76_RS07495 - carbonate dehydratase, at 1,581,803 to 1,584,526
_RS07495
BWI76_RS07500: BWI76_RS07500 - RND transporter MFP subunit, at 1,584,596 to 1,585,675
_RS07500
BWI76_RS07505: BWI76_RS07505 - hydrophobe/amphiphile efflux-1 family RND transporter, at 1,585,689 to 1,588,781
_RS07505
Position (kb)
1584
1585
1586 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1583.675 kb on - strand, within BWI76_RS07495 at 1583.697 kb on - strand, within BWI76_RS07495 at 1584.078 kb on - strand, within BWI76_RS07495 at 1584.085 kb on - strand, within BWI76_RS07495 at 1584.258 kb on + strand at 1584.258 kb on - strand at 1584.309 kb on + strand at 1584.309 kb on + strand at 1584.317 kb on - strand at 1584.674 kb on + strand at 1584.760 kb on - strand, within BWI76_RS07500 at 1584.862 kb on + strand, within BWI76_RS07500 at 1584.862 kb on + strand, within BWI76_RS07500 at 1584.901 kb on - strand, within BWI76_RS07500 at 1585.379 kb on + strand, within BWI76_RS07500 at 1585.525 kb on + strand, within BWI76_RS07500 at 1585.608 kb on - strand at 1585.735 kb on - strand at 1585.739 kb on + strand at 1585.771 kb on + strand at 1585.967 kb on - strand at 1586.131 kb on - strand, within BWI76_RS07505 at 1586.406 kb on - strand, within BWI76_RS07505
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 1,583,675 - BWI76_RS07495 0.69 -0.5 1,583,697 - BWI76_RS07495 0.70 -0.1 1,584,078 - BWI76_RS07495 0.84 -0.2 1,584,085 - BWI76_RS07495 0.84 -0.3 1,584,258 + -0.8 1,584,258 - +0.4 1,584,309 + -0.8 1,584,309 + -2.4 1,584,317 - +2.7 1,584,674 + +2.9 1,584,760 - BWI76_RS07500 0.15 -0.4 1,584,862 + BWI76_RS07500 0.25 -0.9 1,584,862 + BWI76_RS07500 0.25 -1.5 1,584,901 - BWI76_RS07500 0.28 -1.4 1,585,379 + BWI76_RS07500 0.72 -0.4 1,585,525 + BWI76_RS07500 0.86 -1.1 1,585,608 - -0.0 1,585,735 - +0.2 1,585,739 + -0.2 1,585,771 + -1.3 1,585,967 - -0.5 1,586,131 - BWI76_RS07505 0.14 -1.1 1,586,406 - BWI76_RS07505 0.23 -0.9
Or see this region's nucleotide sequence