Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07275

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07265 and BWI76_RS07270 overlap by 8 nucleotidesBWI76_RS07270 and BWI76_RS07275 overlap by 4 nucleotidesBWI76_RS07275 and BWI76_RS07280 are separated by 10 nucleotides BWI76_RS07265: BWI76_RS07265 - ABC transporter ATP-binding protein, at 1,528,943 to 1,529,662 _RS07265 BWI76_RS07270: BWI76_RS07270 - ABC transporter ATP-binding protein, at 1,529,655 to 1,530,422 _RS07270 BWI76_RS07275: BWI76_RS07275 - ABC transporter, at 1,530,419 to 1,531,525 _RS07275 BWI76_RS07280: BWI76_RS07280 - branched-chain amino acid ABC transporter permease, at 1,531,536 to 1,532,486 _RS07280 Position (kb) 1530 1531 1532Strain fitness (log2 ratio) -2 -1 0 1 2at 1529.433 kb on - strand, within BWI76_RS07265at 1529.539 kb on - strand, within BWI76_RS07265at 1529.596 kb on - strandat 1529.596 kb on - strandat 1529.890 kb on + strand, within BWI76_RS07270at 1529.923 kb on - strand, within BWI76_RS07270at 1530.281 kb on + strand, within BWI76_RS07270at 1530.289 kb on - strand, within BWI76_RS07270at 1530.341 kb on + strand, within BWI76_RS07270at 1530.349 kb on - strandat 1530.447 kb on + strandat 1530.487 kb on + strandat 1530.599 kb on + strand, within BWI76_RS07275at 1530.693 kb on - strand, within BWI76_RS07275at 1530.693 kb on - strand, within BWI76_RS07275at 1530.751 kb on - strand, within BWI76_RS07275at 1530.770 kb on + strand, within BWI76_RS07275at 1530.826 kb on - strand, within BWI76_RS07275at 1531.116 kb on - strand, within BWI76_RS07275at 1531.150 kb on - strandat 1531.195 kb on + strand, within BWI76_RS07275at 1531.342 kb on + strand, within BWI76_RS07275at 1531.371 kb on + strand, within BWI76_RS07275at 1531.371 kb on + strand, within BWI76_RS07275at 1531.371 kb on + strand, within BWI76_RS07275at 1531.379 kb on - strand, within BWI76_RS07275at 1531.620 kb on + strandat 1531.658 kb on - strand, within BWI76_RS07280at 1531.974 kb on - strand, within BWI76_RS07280at 1532.024 kb on + strand, within BWI76_RS07280at 1532.068 kb on - strand, within BWI76_RS07280at 1532.272 kb on + strand, within BWI76_RS07280at 1532.340 kb on + strand, within BWI76_RS07280at 1532.395 kb on + strandat 1532.405 kb on - strandat 1532.405 kb on - strandat 1532.410 kb on + strandat 1532.416 kb on - strandat 1532.418 kb on - strandat 1532.446 kb on + strandat 1532.477 kb on - strandat 1532.501 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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1,529,433 - BWI76_RS07265 0.68 -1.6
1,529,539 - BWI76_RS07265 0.83 -1.4
1,529,596 - +0.7
1,529,596 - +0.3
1,529,890 + BWI76_RS07270 0.31 -1.2
1,529,923 - BWI76_RS07270 0.35 +0.1
1,530,281 + BWI76_RS07270 0.82 -0.2
1,530,289 - BWI76_RS07270 0.83 +0.2
1,530,341 + BWI76_RS07270 0.89 -0.1
1,530,349 - +0.5
1,530,447 + -0.5
1,530,487 + +0.1
1,530,599 + BWI76_RS07275 0.16 -1.9
1,530,693 - BWI76_RS07275 0.25 +0.9
1,530,693 - BWI76_RS07275 0.25 -0.2
1,530,751 - BWI76_RS07275 0.30 +0.3
1,530,770 + BWI76_RS07275 0.32 +2.2
1,530,826 - BWI76_RS07275 0.37 -0.3
1,531,116 - BWI76_RS07275 0.63 -0.6
1,531,150 - -1.0
1,531,195 + BWI76_RS07275 0.70 -1.2
1,531,342 + BWI76_RS07275 0.83 -0.5
1,531,371 + BWI76_RS07275 0.86 -0.0
1,531,371 + BWI76_RS07275 0.86 -2.0
1,531,371 + BWI76_RS07275 0.86 -0.2
1,531,379 - BWI76_RS07275 0.87 -0.6
1,531,620 + +0.0
1,531,658 - BWI76_RS07280 0.13 +0.4
1,531,974 - BWI76_RS07280 0.46 -0.3
1,532,024 + BWI76_RS07280 0.51 -1.0
1,532,068 - BWI76_RS07280 0.56 -1.5
1,532,272 + BWI76_RS07280 0.77 -2.6
1,532,340 + BWI76_RS07280 0.85 -1.1
1,532,395 + -0.4
1,532,405 - -0.8
1,532,405 - -0.5
1,532,410 + -1.2
1,532,416 - -0.0
1,532,418 - +0.2
1,532,446 + -1.3
1,532,477 - +1.6
1,532,501 - +0.2

Or see this region's nucleotide sequence