Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06195

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06185 and BWI76_RS06190 are separated by 71 nucleotidesBWI76_RS06190 and BWI76_RS06195 are separated by 268 nucleotidesBWI76_RS06195 and BWI76_RS06200 are separated by 87 nucleotidesBWI76_RS06200 and BWI76_RS06205 are separated by 45 nucleotides BWI76_RS06185: BWI76_RS06185 - shikimate kinase II, at 1,298,377 to 1,298,904 _RS06185 BWI76_RS06190: BWI76_RS06190 - hypothetical protein, at 1,298,976 to 1,299,167 _RS06190 BWI76_RS06195: BWI76_RS06195 - hypothetical protein, at 1,299,436 to 1,300,101 _RS06195 BWI76_RS06200: BWI76_RS06200 - hypothetical protein, at 1,300,189 to 1,300,473 _RS06200 BWI76_RS06205: BWI76_RS06205 - recombination-associated protein RdgC, at 1,300,519 to 1,301,430 _RS06205 Position (kb) 1299 1300 1301Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 1298.456 kb on + strand, within BWI76_RS06185at 1298.464 kb on - strand, within BWI76_RS06185at 1298.500 kb on - strand, within BWI76_RS06185at 1298.615 kb on + strand, within BWI76_RS06185at 1298.623 kb on - strand, within BWI76_RS06185at 1298.623 kb on - strand, within BWI76_RS06185at 1298.623 kb on - strand, within BWI76_RS06185at 1298.623 kb on - strand, within BWI76_RS06185at 1298.645 kb on - strand, within BWI76_RS06185at 1298.672 kb on + strand, within BWI76_RS06185at 1298.705 kb on - strand, within BWI76_RS06185at 1298.762 kb on + strand, within BWI76_RS06185at 1298.805 kb on - strand, within BWI76_RS06185at 1298.898 kb on - strandat 1299.063 kb on - strand, within BWI76_RS06190at 1299.063 kb on - strand, within BWI76_RS06190at 1299.063 kb on - strand, within BWI76_RS06190at 1299.325 kb on - strandat 1299.477 kb on + strandat 1299.630 kb on + strand, within BWI76_RS06195at 1299.663 kb on - strand, within BWI76_RS06195at 1299.665 kb on + strand, within BWI76_RS06195at 1299.717 kb on + strand, within BWI76_RS06195at 1299.773 kb on + strand, within BWI76_RS06195at 1299.809 kb on + strand, within BWI76_RS06195at 1299.809 kb on + strand, within BWI76_RS06195at 1299.817 kb on - strand, within BWI76_RS06195at 1299.891 kb on + strand, within BWI76_RS06195at 1299.902 kb on + strand, within BWI76_RS06195at 1300.156 kb on - strandat 1300.179 kb on - strandat 1300.250 kb on + strand, within BWI76_RS06200at 1300.448 kb on + strandat 1300.664 kb on - strand, within BWI76_RS06205at 1300.989 kb on - strand, within BWI76_RS06205at 1301.100 kb on - strand, within BWI76_RS06205

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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1,298,456 + BWI76_RS06185 0.15 -0.0
1,298,464 - BWI76_RS06185 0.16 -0.9
1,298,500 - BWI76_RS06185 0.23 +0.5
1,298,615 + BWI76_RS06185 0.45 +1.0
1,298,623 - BWI76_RS06185 0.47 -0.5
1,298,623 - BWI76_RS06185 0.47 -0.6
1,298,623 - BWI76_RS06185 0.47 -0.6
1,298,623 - BWI76_RS06185 0.47 +0.1
1,298,645 - BWI76_RS06185 0.51 +0.8
1,298,672 + BWI76_RS06185 0.56 -1.3
1,298,705 - BWI76_RS06185 0.62 -0.9
1,298,762 + BWI76_RS06185 0.73 -0.3
1,298,805 - BWI76_RS06185 0.81 +0.0
1,298,898 - +0.2
1,299,063 - BWI76_RS06190 0.45 +0.4
1,299,063 - BWI76_RS06190 0.45 -0.7
1,299,063 - BWI76_RS06190 0.45 +1.3
1,299,325 - +0.3
1,299,477 + -0.5
1,299,630 + BWI76_RS06195 0.29 -0.6
1,299,663 - BWI76_RS06195 0.34 -0.1
1,299,665 + BWI76_RS06195 0.34 +0.1
1,299,717 + BWI76_RS06195 0.42 -0.5
1,299,773 + BWI76_RS06195 0.51 +0.1
1,299,809 + BWI76_RS06195 0.56 -0.3
1,299,809 + BWI76_RS06195 0.56 +7.2
1,299,817 - BWI76_RS06195 0.57 -0.1
1,299,891 + BWI76_RS06195 0.68 +0.8
1,299,902 + BWI76_RS06195 0.70 +0.5
1,300,156 - -0.2
1,300,179 - +0.9
1,300,250 + BWI76_RS06200 0.21 -0.4
1,300,448 + -0.5
1,300,664 - BWI76_RS06205 0.16 -2.0
1,300,989 - BWI76_RS06205 0.52 -0.3
1,301,100 - BWI76_RS06205 0.64 -0.1

Or see this region's nucleotide sequence