Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04620 and BWI76_RS04625 are separated by 87 nucleotides BWI76_RS04625 and BWI76_RS04630 are separated by 231 nucleotides BWI76_RS04630 and BWI76_RS04635 are separated by 46 nucleotides
BWI76_RS04620: BWI76_RS04620 - transcriptional regulator SgrR, at 961,923 to 963,578
_RS04620
BWI76_RS04625: BWI76_RS04625 - glucose uptake inhibitor SgrT, at 963,666 to 963,818
_RS04625
BWI76_RS04630: BWI76_RS04630 - sugar efflux transporter SetB, at 964,050 to 965,234
_RS04630
BWI76_RS04635: BWI76_RS04635 - MFS transporter, at 965,281 to 966,591
_RS04635
Position (kb) 964
965
966 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 963.194 kb on + strand, within BWI76_RS04620 at 963.230 kb on + strand, within BWI76_RS04620 at 963.364 kb on + strand, within BWI76_RS04620 at 963.364 kb on + strand, within BWI76_RS04620 at 963.397 kb on + strand, within BWI76_RS04620 at 963.774 kb on + strand, within BWI76_RS04625 at 963.785 kb on + strand, within BWI76_RS04625 at 963.805 kb on + strand at 963.805 kb on + strand at 963.813 kb on - strand at 963.827 kb on + strand at 963.827 kb on + strand at 963.827 kb on + strand at 963.975 kb on + strand at 963.975 kb on + strand at 963.975 kb on + strand at 964.159 kb on + strand at 964.203 kb on + strand, within BWI76_RS04630 at 964.208 kb on + strand, within BWI76_RS04630 at 964.246 kb on + strand, within BWI76_RS04630 at 964.263 kb on + strand, within BWI76_RS04630 at 964.365 kb on - strand, within BWI76_RS04630 at 964.365 kb on - strand, within BWI76_RS04630 at 964.386 kb on - strand, within BWI76_RS04630 at 964.386 kb on - strand, within BWI76_RS04630 at 964.464 kb on + strand, within BWI76_RS04630 at 964.496 kb on + strand, within BWI76_RS04630 at 964.524 kb on + strand, within BWI76_RS04630 at 964.593 kb on + strand, within BWI76_RS04630 at 964.595 kb on + strand, within BWI76_RS04630 at 964.600 kb on + strand, within BWI76_RS04630 at 964.658 kb on - strand, within BWI76_RS04630 at 964.807 kb on + strand, within BWI76_RS04630 at 964.900 kb on + strand, within BWI76_RS04630 at 964.942 kb on - strand, within BWI76_RS04630 at 964.953 kb on - strand, within BWI76_RS04630 at 964.966 kb on + strand, within BWI76_RS04630 at 964.966 kb on + strand, within BWI76_RS04630 at 964.991 kb on + strand, within BWI76_RS04630 at 964.999 kb on - strand, within BWI76_RS04630 at 964.999 kb on - strand, within BWI76_RS04630 at 965.063 kb on + strand, within BWI76_RS04630 at 965.071 kb on - strand, within BWI76_RS04630 at 965.122 kb on + strand at 965.125 kb on - strand at 965.125 kb on - strand at 965.126 kb on + strand at 965.141 kb on + strand at 965.141 kb on + strand at 965.149 kb on + strand at 965.149 kb on + strand at 965.149 kb on - strand at 965.150 kb on - strand at 965.157 kb on - strand at 965.159 kb on + strand at 965.159 kb on + strand at 965.159 kb on + strand at 965.167 kb on - strand at 965.204 kb on + strand at 965.204 kb on + strand at 965.204 kb on + strand at 965.204 kb on + strand at 965.204 kb on + strand at 965.204 kb on + strand at 965.204 kb on + strand at 965.204 kb on + strand at 965.204 kb on + strand at 965.204 kb on + strand at 965.204 kb on + strand at 965.204 kb on + strand at 965.212 kb on - strand at 965.212 kb on - strand at 965.212 kb on - strand at 965.212 kb on - strand at 965.229 kb on + strand at 965.251 kb on + strand at 965.260 kb on + strand at 965.266 kb on - strand at 965.267 kb on - strand at 965.269 kb on + strand at 965.272 kb on - strand at 965.277 kb on - strand at 965.277 kb on - strand at 965.277 kb on - strand at 965.277 kb on - strand at 965.277 kb on - strand at 965.277 kb on - strand at 965.277 kb on - strand at 965.277 kb on - strand at 965.287 kb on - strand at 965.449 kb on + strand, within BWI76_RS04635 at 965.522 kb on + strand, within BWI76_RS04635 at 965.534 kb on - strand, within BWI76_RS04635 at 965.570 kb on + strand, within BWI76_RS04635 at 965.570 kb on + strand, within BWI76_RS04635 at 965.570 kb on + strand at 965.578 kb on - strand, within BWI76_RS04635 at 965.580 kb on + strand at 965.595 kb on + strand, within BWI76_RS04635 at 965.595 kb on + strand, within BWI76_RS04635 at 965.595 kb on + strand, within BWI76_RS04635 at 965.595 kb on + strand, within BWI76_RS04635 at 965.595 kb on + strand at 965.595 kb on + strand, within BWI76_RS04635 at 965.595 kb on + strand, within BWI76_RS04635 at 965.603 kb on - strand, within BWI76_RS04635 at 965.603 kb on - strand at 965.603 kb on - strand, within BWI76_RS04635 at 965.603 kb on - strand, within BWI76_RS04635 at 965.603 kb on - strand, within BWI76_RS04635 at 965.603 kb on - strand, within BWI76_RS04635 at 965.603 kb on - strand, within BWI76_RS04635 at 965.613 kb on - strand, within BWI76_RS04635 at 965.728 kb on - strand, within BWI76_RS04635 at 965.728 kb on - strand, within BWI76_RS04635 at 965.730 kb on + strand, within BWI76_RS04635 at 965.736 kb on - strand at 965.738 kb on - strand, within BWI76_RS04635 at 965.738 kb on - strand, within BWI76_RS04635 at 965.751 kb on + strand, within BWI76_RS04635 at 965.755 kb on - strand, within BWI76_RS04635 at 965.789 kb on + strand, within BWI76_RS04635 at 965.797 kb on - strand, within BWI76_RS04635 at 965.797 kb on - strand, within BWI76_RS04635 at 965.797 kb on - strand, within BWI76_RS04635 at 965.804 kb on + strand, within BWI76_RS04635 at 965.807 kb on + strand, within BWI76_RS04635 at 965.815 kb on - strand, within BWI76_RS04635 at 965.816 kb on + strand, within BWI76_RS04635 at 965.817 kb on - strand, within BWI76_RS04635 at 965.846 kb on - strand, within BWI76_RS04635 at 965.846 kb on - strand, within BWI76_RS04635 at 965.862 kb on + strand, within BWI76_RS04635 at 965.869 kb on + strand, within BWI76_RS04635 at 965.872 kb on + strand, within BWI76_RS04635 at 965.872 kb on + strand at 965.872 kb on + strand, within BWI76_RS04635 at 965.873 kb on + strand, within BWI76_RS04635 at 965.877 kb on - strand, within BWI76_RS04635 at 965.881 kb on + strand, within BWI76_RS04635 at 965.881 kb on + strand, within BWI76_RS04635 at 965.881 kb on + strand, within BWI76_RS04635 at 965.889 kb on - strand, within BWI76_RS04635 at 965.889 kb on - strand, within BWI76_RS04635 at 965.896 kb on + strand, within BWI76_RS04635 at 965.904 kb on - strand, within BWI76_RS04635 at 965.904 kb on - strand, within BWI76_RS04635 at 965.904 kb on - strand, within BWI76_RS04635 at 965.904 kb on - strand, within BWI76_RS04635 at 965.947 kb on - strand, within BWI76_RS04635 at 965.955 kb on - strand, within BWI76_RS04635 at 965.955 kb on - strand, within BWI76_RS04635 at 965.990 kb on + strand, within BWI76_RS04635 at 966.069 kb on - strand, within BWI76_RS04635 at 966.108 kb on + strand, within BWI76_RS04635 at 966.108 kb on + strand, within BWI76_RS04635 at 966.108 kb on + strand, within BWI76_RS04635 at 966.108 kb on + strand, within BWI76_RS04635 at 966.116 kb on - strand, within BWI76_RS04635 at 966.126 kb on + strand, within BWI76_RS04635 at 966.136 kb on - strand, within BWI76_RS04635 at 966.152 kb on + strand, within BWI76_RS04635 at 966.152 kb on + strand, within BWI76_RS04635 at 966.152 kb on + strand, within BWI76_RS04635 at 966.152 kb on + strand, within BWI76_RS04635 at 966.160 kb on - strand, within BWI76_RS04635 at 966.160 kb on - strand, within BWI76_RS04635 at 966.160 kb on - strand, within BWI76_RS04635 at 966.160 kb on - strand, within BWI76_RS04635 at 966.160 kb on - strand, within BWI76_RS04635 at 966.164 kb on - strand, within BWI76_RS04635 at 966.187 kb on + strand, within BWI76_RS04635 at 966.195 kb on - strand, within BWI76_RS04635 at 966.200 kb on + strand, within BWI76_RS04635 at 966.202 kb on + strand, within BWI76_RS04635 at 966.207 kb on + strand, within BWI76_RS04635 at 966.214 kb on + strand, within BWI76_RS04635 at 966.217 kb on - strand, within BWI76_RS04635 at 966.219 kb on + strand, within BWI76_RS04635 at 966.220 kb on + strand, within BWI76_RS04635 at 966.220 kb on + strand, within BWI76_RS04635 at 966.220 kb on + strand, within BWI76_RS04635 at 966.222 kb on - strand, within BWI76_RS04635 at 966.222 kb on - strand, within BWI76_RS04635 at 966.225 kb on + strand, within BWI76_RS04635 at 966.226 kb on + strand, within BWI76_RS04635 at 966.228 kb on - strand, within BWI76_RS04635 at 966.228 kb on - strand at 966.228 kb on - strand, within BWI76_RS04635 at 966.228 kb on - strand, within BWI76_RS04635 at 966.228 kb on - strand, within BWI76_RS04635 at 966.228 kb on - strand, within BWI76_RS04635 at 966.228 kb on - strand, within BWI76_RS04635 at 966.228 kb on - strand, within BWI76_RS04635 at 966.228 kb on - strand, within BWI76_RS04635 at 966.228 kb on - strand, within BWI76_RS04635 at 966.229 kb on - strand, within BWI76_RS04635 at 966.229 kb on - strand at 966.232 kb on + strand, within BWI76_RS04635 at 966.233 kb on - strand, within BWI76_RS04635 at 966.233 kb on - strand, within BWI76_RS04635
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 963,194 + BWI76_RS04620 0.77 +0.0 963,230 + BWI76_RS04620 0.79 +1.3 963,364 + BWI76_RS04620 0.87 +0.3 963,364 + BWI76_RS04620 0.87 -0.8 963,397 + BWI76_RS04620 0.89 -0.4 963,774 + BWI76_RS04625 0.71 -1.4 963,785 + BWI76_RS04625 0.78 -0.4 963,805 + +0.7 963,805 + -0.8 963,813 - -0.1 963,827 + -0.1 963,827 + -0.6 963,827 + -2.4 963,975 + -0.0 963,975 + -0.6 963,975 + -0.9 964,159 + -0.4 964,203 + BWI76_RS04630 0.13 -0.1 964,208 + BWI76_RS04630 0.13 +0.6 964,246 + BWI76_RS04630 0.17 +1.0 964,263 + BWI76_RS04630 0.18 +0.0 964,365 - BWI76_RS04630 0.27 +0.8 964,365 - BWI76_RS04630 0.27 +4.1 964,386 - BWI76_RS04630 0.28 +0.3 964,386 - BWI76_RS04630 0.28 -0.0 964,464 + BWI76_RS04630 0.35 +1.0 964,496 + BWI76_RS04630 0.38 +1.8 964,524 + BWI76_RS04630 0.40 -0.0 964,593 + BWI76_RS04630 0.46 +0.2 964,595 + BWI76_RS04630 0.46 -0.3 964,600 + BWI76_RS04630 0.46 -0.4 964,658 - BWI76_RS04630 0.51 +0.5 964,807 + BWI76_RS04630 0.64 +0.5 964,900 + BWI76_RS04630 0.72 +0.0 964,942 - BWI76_RS04630 0.75 -0.1 964,953 - BWI76_RS04630 0.76 -1.2 964,966 + BWI76_RS04630 0.77 +0.4 964,966 + BWI76_RS04630 0.77 +0.3 964,991 + BWI76_RS04630 0.79 +0.4 964,999 - BWI76_RS04630 0.80 -0.3 964,999 - BWI76_RS04630 0.80 -0.1 965,063 + BWI76_RS04630 0.85 -0.1 965,071 - BWI76_RS04630 0.86 +0.3 965,122 + -0.5 965,125 - +0.1 965,125 - -0.1 965,126 + -0.5 965,141 + +0.5 965,141 + +1.5 965,149 + +0.5 965,149 + -0.4 965,149 - +1.2 965,150 - +1.0 965,157 - +1.8 965,159 + -0.1 965,159 + -0.7 965,159 + +0.1 965,167 - -0.8 965,204 + -0.5 965,204 + -0.8 965,204 + -0.2 965,204 + +0.1 965,204 + -0.1 965,204 + +0.7 965,204 + +0.2 965,204 + +0.0 965,204 + -0.1 965,204 + +0.7 965,204 + -0.3 965,204 + +0.3 965,212 - +0.3 965,212 - +1.0 965,212 - +0.1 965,212 - +0.5 965,229 + -0.4 965,251 + -0.9 965,260 + -0.7 965,266 - -1.1 965,267 - +0.1 965,269 + -1.0 965,272 - +0.2 965,277 - -0.5 965,277 - -0.9 965,277 - +0.3 965,277 - -0.5 965,277 - +0.9 965,277 - -0.0 965,277 - -1.4 965,277 - +0.2 965,287 - -1.4 965,449 + BWI76_RS04635 0.13 +0.3 965,522 + BWI76_RS04635 0.18 -1.0 965,534 - BWI76_RS04635 0.19 +0.5 965,570 + BWI76_RS04635 0.22 -0.1 965,570 + BWI76_RS04635 0.22 +0.5 965,570 + +1.3 965,578 - BWI76_RS04635 0.23 -0.8 965,580 + +1.2 965,595 + BWI76_RS04635 0.24 -0.0 965,595 + BWI76_RS04635 0.24 +1.6 965,595 + BWI76_RS04635 0.24 -1.7 965,595 + BWI76_RS04635 0.24 +0.3 965,595 + +1.1 965,595 + BWI76_RS04635 0.24 -0.2 965,595 + BWI76_RS04635 0.24 +1.6 965,603 - BWI76_RS04635 0.25 +0.0 965,603 - +0.0 965,603 - BWI76_RS04635 0.25 +1.2 965,603 - BWI76_RS04635 0.25 -0.3 965,603 - BWI76_RS04635 0.25 -0.0 965,603 - BWI76_RS04635 0.25 +0.3 965,603 - BWI76_RS04635 0.25 -0.3 965,613 - BWI76_RS04635 0.25 +0.3 965,728 - BWI76_RS04635 0.34 +0.4 965,728 - BWI76_RS04635 0.34 -0.1 965,730 + BWI76_RS04635 0.34 -0.1 965,736 - -0.1 965,738 - BWI76_RS04635 0.35 +1.7 965,738 - BWI76_RS04635 0.35 -1.3 965,751 + BWI76_RS04635 0.36 +0.4 965,755 - BWI76_RS04635 0.36 -0.3 965,789 + BWI76_RS04635 0.39 -1.0 965,797 - BWI76_RS04635 0.39 -1.1 965,797 - BWI76_RS04635 0.39 -1.2 965,797 - BWI76_RS04635 0.39 -0.3 965,804 + BWI76_RS04635 0.40 +2.1 965,807 + BWI76_RS04635 0.40 +0.5 965,815 - BWI76_RS04635 0.41 -1.3 965,816 + BWI76_RS04635 0.41 -1.0 965,817 - BWI76_RS04635 0.41 +0.6 965,846 - BWI76_RS04635 0.43 -0.7 965,846 - BWI76_RS04635 0.43 -1.2 965,862 + BWI76_RS04635 0.44 +0.6 965,869 + BWI76_RS04635 0.45 -0.1 965,872 + BWI76_RS04635 0.45 -0.2 965,872 + +1.9 965,872 + BWI76_RS04635 0.45 -0.6 965,873 + BWI76_RS04635 0.45 +5.0 965,877 - BWI76_RS04635 0.45 -0.6 965,881 + BWI76_RS04635 0.46 -0.7 965,881 + BWI76_RS04635 0.46 +0.1 965,881 + BWI76_RS04635 0.46 -0.5 965,889 - BWI76_RS04635 0.46 +0.0 965,889 - BWI76_RS04635 0.46 -0.7 965,896 + BWI76_RS04635 0.47 +0.5 965,904 - BWI76_RS04635 0.48 +0.8 965,904 - BWI76_RS04635 0.48 -0.1 965,904 - BWI76_RS04635 0.48 -0.1 965,904 - BWI76_RS04635 0.48 +0.1 965,947 - BWI76_RS04635 0.51 +0.7 965,955 - BWI76_RS04635 0.51 -0.3 965,955 - BWI76_RS04635 0.51 +1.1 965,990 + BWI76_RS04635 0.54 +7.1 966,069 - BWI76_RS04635 0.60 -0.6 966,108 + BWI76_RS04635 0.63 -1.6 966,108 + BWI76_RS04635 0.63 -0.8 966,108 + BWI76_RS04635 0.63 +0.5 966,108 + BWI76_RS04635 0.63 +0.9 966,116 - BWI76_RS04635 0.64 +0.6 966,126 + BWI76_RS04635 0.64 -0.6 966,136 - BWI76_RS04635 0.65 -0.8 966,152 + BWI76_RS04635 0.66 -1.2 966,152 + BWI76_RS04635 0.66 +0.5 966,152 + BWI76_RS04635 0.66 -0.2 966,152 + BWI76_RS04635 0.66 -0.8 966,160 - BWI76_RS04635 0.67 +0.2 966,160 - BWI76_RS04635 0.67 -0.8 966,160 - BWI76_RS04635 0.67 +0.1 966,160 - BWI76_RS04635 0.67 -0.5 966,160 - BWI76_RS04635 0.67 +1.0 966,164 - BWI76_RS04635 0.67 +1.5 966,187 + BWI76_RS04635 0.69 +1.9 966,195 - BWI76_RS04635 0.70 +0.9 966,200 + BWI76_RS04635 0.70 +0.9 966,202 + BWI76_RS04635 0.70 +0.3 966,207 + BWI76_RS04635 0.71 +0.1 966,214 + BWI76_RS04635 0.71 -0.8 966,217 - BWI76_RS04635 0.71 -0.4 966,219 + BWI76_RS04635 0.72 -1.0 966,220 + BWI76_RS04635 0.72 +0.5 966,220 + BWI76_RS04635 0.72 +0.7 966,220 + BWI76_RS04635 0.72 -0.5 966,222 - BWI76_RS04635 0.72 +0.4 966,222 - BWI76_RS04635 0.72 -0.1 966,225 + BWI76_RS04635 0.72 +2.2 966,226 + BWI76_RS04635 0.72 -0.5 966,228 - BWI76_RS04635 0.72 +0.5 966,228 - +0.5 966,228 - BWI76_RS04635 0.72 -0.2 966,228 - BWI76_RS04635 0.72 -0.4 966,228 - BWI76_RS04635 0.72 -1.2 966,228 - BWI76_RS04635 0.72 -0.5 966,228 - BWI76_RS04635 0.72 -0.3 966,228 - BWI76_RS04635 0.72 -0.5 966,228 - BWI76_RS04635 0.72 -0.0 966,228 - BWI76_RS04635 0.72 +0.2 966,229 - BWI76_RS04635 0.72 -0.1 966,229 - -0.3 966,232 + BWI76_RS04635 0.73 +1.5 966,233 - BWI76_RS04635 0.73 +1.3 966,233 - BWI76_RS04635 0.73 -0.8
Or see this region's nucleotide sequence