Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04620 and BWI76_RS04625 are separated by 87 nucleotides BWI76_RS04625 and BWI76_RS04630 are separated by 231 nucleotides
BWI76_RS04620: BWI76_RS04620 - transcriptional regulator SgrR, at 961,923 to 963,578
_RS04620
BWI76_RS04625: BWI76_RS04625 - glucose uptake inhibitor SgrT, at 963,666 to 963,818
_RS04625
BWI76_RS04630: BWI76_RS04630 - sugar efflux transporter SetB, at 964,050 to 965,234
_RS04630
Position (kb) 963
964 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 962.759 kb on + strand, within BWI76_RS04620 at 962.761 kb on + strand, within BWI76_RS04620 at 962.837 kb on - strand, within BWI76_RS04620 at 962.885 kb on + strand, within BWI76_RS04620 at 962.885 kb on + strand, within BWI76_RS04620 at 963.194 kb on + strand, within BWI76_RS04620 at 963.230 kb on + strand, within BWI76_RS04620 at 963.364 kb on + strand, within BWI76_RS04620 at 963.364 kb on + strand, within BWI76_RS04620 at 963.397 kb on + strand, within BWI76_RS04620 at 963.774 kb on + strand, within BWI76_RS04625 at 963.785 kb on + strand, within BWI76_RS04625 at 963.805 kb on + strand at 963.805 kb on + strand at 963.813 kb on - strand at 963.827 kb on + strand at 963.827 kb on + strand at 963.827 kb on + strand at 963.975 kb on + strand at 963.975 kb on + strand at 963.975 kb on + strand at 964.159 kb on + strand at 964.203 kb on + strand, within BWI76_RS04630 at 964.208 kb on + strand, within BWI76_RS04630 at 964.246 kb on + strand, within BWI76_RS04630 at 964.263 kb on + strand, within BWI76_RS04630 at 964.365 kb on - strand, within BWI76_RS04630 at 964.365 kb on - strand, within BWI76_RS04630 at 964.386 kb on - strand, within BWI76_RS04630 at 964.386 kb on - strand, within BWI76_RS04630 at 964.464 kb on + strand, within BWI76_RS04630 at 964.496 kb on + strand, within BWI76_RS04630 at 964.524 kb on + strand, within BWI76_RS04630 at 964.593 kb on + strand, within BWI76_RS04630 at 964.595 kb on + strand, within BWI76_RS04630 at 964.600 kb on + strand, within BWI76_RS04630 at 964.658 kb on - strand, within BWI76_RS04630 at 964.807 kb on + strand, within BWI76_RS04630
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 962,759 + BWI76_RS04620 0.50 -0.4 962,761 + BWI76_RS04620 0.51 -0.8 962,837 - BWI76_RS04620 0.55 -0.0 962,885 + BWI76_RS04620 0.58 +0.4 962,885 + BWI76_RS04620 0.58 -0.4 963,194 + BWI76_RS04620 0.77 +0.0 963,230 + BWI76_RS04620 0.79 +1.3 963,364 + BWI76_RS04620 0.87 +0.3 963,364 + BWI76_RS04620 0.87 -0.8 963,397 + BWI76_RS04620 0.89 -0.4 963,774 + BWI76_RS04625 0.71 -1.4 963,785 + BWI76_RS04625 0.78 -0.4 963,805 + +0.7 963,805 + -0.8 963,813 - -0.1 963,827 + -0.1 963,827 + -0.6 963,827 + -2.4 963,975 + -0.0 963,975 + -0.6 963,975 + -0.9 964,159 + -0.4 964,203 + BWI76_RS04630 0.13 -0.1 964,208 + BWI76_RS04630 0.13 +0.6 964,246 + BWI76_RS04630 0.17 +1.0 964,263 + BWI76_RS04630 0.18 +0.0 964,365 - BWI76_RS04630 0.27 +0.8 964,365 - BWI76_RS04630 0.27 +4.1 964,386 - BWI76_RS04630 0.28 +0.3 964,386 - BWI76_RS04630 0.28 -0.0 964,464 + BWI76_RS04630 0.35 +1.0 964,496 + BWI76_RS04630 0.38 +1.8 964,524 + BWI76_RS04630 0.40 -0.0 964,593 + BWI76_RS04630 0.46 +0.2 964,595 + BWI76_RS04630 0.46 -0.3 964,600 + BWI76_RS04630 0.46 -0.4 964,658 - BWI76_RS04630 0.51 +0.5 964,807 + BWI76_RS04630 0.64 +0.5
Or see this region's nucleotide sequence