Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2204

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2202 and Dshi_2203 are separated by 95 nucleotidesDshi_2203 and Dshi_2204 are separated by 88 nucleotidesDshi_2204 and Dshi_2205 are separated by 39 nucleotidesDshi_2205 and Dshi_2206 are separated by 122 nucleotides Dshi_2202: Dshi_2202 - hypothetical protein (RefSeq), at 2,328,739 to 2,329,656 _2202 Dshi_2203: Dshi_2203 - cytidyltransferase-related domain (RefSeq), at 2,329,752 to 2,330,339 _2203 Dshi_2204: Dshi_2204 - hypothetical protein (RefSeq), at 2,330,428 to 2,330,763 _2204 Dshi_2205: Dshi_2205 - hypothetical protein (RefSeq), at 2,330,803 to 2,331,225 _2205 Dshi_2206: Dshi_2206 - lysyl-tRNA synthetase (RefSeq), at 2,331,348 to 2,333,006 _2206 Position (kb) 2330 2331Strain fitness (log2 ratio) -1 0 1 2at 2329.470 kb on + strand, within Dshi_2202at 2329.521 kb on + strand, within Dshi_2202at 2329.736 kb on + strandat 2329.741 kb on + strandat 2330.385 kb on - strandat 2330.412 kb on - strandat 2330.452 kb on - strandat 2330.584 kb on - strand, within Dshi_2204at 2330.608 kb on - strand, within Dshi_2204at 2330.618 kb on + strand, within Dshi_2204at 2330.765 kb on - strandat 2330.999 kb on + strand, within Dshi_2205

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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2,329,470 + Dshi_2202 0.80 +1.3
2,329,521 + Dshi_2202 0.85 -0.2
2,329,736 + -0.0
2,329,741 + -0.1
2,330,385 - +1.9
2,330,412 - -0.4
2,330,452 - -0.1
2,330,584 - Dshi_2204 0.46 +1.6
2,330,608 - Dshi_2204 0.54 +0.1
2,330,618 + Dshi_2204 0.57 +0.8
2,330,765 - +1.6
2,330,999 + Dshi_2205 0.46 -0.8

Or see this region's nucleotide sequence