Experiment: Carbon source D-Glucose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2202 and Dshi_2203 are separated by 95 nucleotides Dshi_2203 and Dshi_2204 are separated by 88 nucleotides Dshi_2204 and Dshi_2205 are separated by 39 nucleotides Dshi_2205 and Dshi_2206 are separated by 122 nucleotides
Dshi_2202: Dshi_2202 - hypothetical protein (RefSeq), at 2,328,739 to 2,329,656
_2202
Dshi_2203: Dshi_2203 - cytidyltransferase-related domain (RefSeq), at 2,329,752 to 2,330,339
_2203
Dshi_2204: Dshi_2204 - hypothetical protein (RefSeq), at 2,330,428 to 2,330,763
_2204
Dshi_2205: Dshi_2205 - hypothetical protein (RefSeq), at 2,330,803 to 2,331,225
_2205
Dshi_2206: Dshi_2206 - lysyl-tRNA synthetase (RefSeq), at 2,331,348 to 2,333,006
_2206
Position (kb)
2330
2331 Strain fitness (log2 ratio)
-1
0
1
2 at 2329.470 kb on + strand, within Dshi_2202 at 2329.521 kb on + strand, within Dshi_2202 at 2329.736 kb on + strand at 2329.741 kb on + strand at 2330.385 kb on - strand at 2330.412 kb on - strand at 2330.452 kb on - strand at 2330.584 kb on - strand, within Dshi_2204 at 2330.608 kb on - strand, within Dshi_2204 at 2330.618 kb on + strand, within Dshi_2204 at 2330.765 kb on - strand at 2330.999 kb on + strand, within Dshi_2205
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM remove 2,329,470 + Dshi_2202 0.80 +1.3 2,329,521 + Dshi_2202 0.85 -0.2 2,329,736 + -0.0 2,329,741 + -0.1 2,330,385 - +1.9 2,330,412 - -0.4 2,330,452 - -0.1 2,330,584 - Dshi_2204 0.46 +1.6 2,330,608 - Dshi_2204 0.54 +0.1 2,330,618 + Dshi_2204 0.57 +0.8 2,330,765 - +1.6 2,330,999 + Dshi_2205 0.46 -0.8
Or see this region's nucleotide sequence