Experiment: Carbon source D-Glucose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2202 and Dshi_2203 are separated by 95 nucleotides Dshi_2203 and Dshi_2204 are separated by 88 nucleotides Dshi_2204 and Dshi_2205 are separated by 39 nucleotides
Dshi_2202: Dshi_2202 - hypothetical protein (RefSeq), at 2,328,739 to 2,329,656
_2202
Dshi_2203: Dshi_2203 - cytidyltransferase-related domain (RefSeq), at 2,329,752 to 2,330,339
_2203
Dshi_2204: Dshi_2204 - hypothetical protein (RefSeq), at 2,330,428 to 2,330,763
_2204
Dshi_2205: Dshi_2205 - hypothetical protein (RefSeq), at 2,330,803 to 2,331,225
_2205
Position (kb)
2329
2330
2331 Strain fitness (log2 ratio)
-1
0
1
2 at 2328.759 kb on + strand at 2328.941 kb on + strand, within Dshi_2202 at 2329.081 kb on - strand, within Dshi_2202 at 2329.306 kb on + strand, within Dshi_2202 at 2329.328 kb on + strand, within Dshi_2202 at 2329.470 kb on + strand, within Dshi_2202 at 2329.521 kb on + strand, within Dshi_2202 at 2329.736 kb on + strand at 2329.741 kb on + strand at 2330.385 kb on - strand at 2330.412 kb on - strand at 2330.452 kb on - strand at 2330.584 kb on - strand, within Dshi_2204 at 2330.608 kb on - strand, within Dshi_2204 at 2330.618 kb on + strand, within Dshi_2204 at 2330.765 kb on - strand at 2330.999 kb on + strand, within Dshi_2205
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM remove 2,328,759 + +0.0 2,328,941 + Dshi_2202 0.22 -0.5 2,329,081 - Dshi_2202 0.37 +1.0 2,329,306 + Dshi_2202 0.62 -0.2 2,329,328 + Dshi_2202 0.64 +0.8 2,329,470 + Dshi_2202 0.80 +1.3 2,329,521 + Dshi_2202 0.85 -0.2 2,329,736 + -0.0 2,329,741 + -0.1 2,330,385 - +1.9 2,330,412 - -0.4 2,330,452 - -0.1 2,330,584 - Dshi_2204 0.46 +1.6 2,330,608 - Dshi_2204 0.54 +0.1 2,330,618 + Dshi_2204 0.57 +0.8 2,330,765 - +1.6 2,330,999 + Dshi_2205 0.46 -0.8
Or see this region's nucleotide sequence