Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2063

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2062 and Dshi_2063 overlap by 4 nucleotidesDshi_2063 and Dshi_2064 are separated by 32 nucleotidesDshi_2064 and Dshi_2065 are separated by 75 nucleotides Dshi_2062: Dshi_2062 - PTSINtr with GAF domain, PtsP (RefSeq), at 2,182,811 to 2,185,054 _2062 Dshi_2063: Dshi_2063 - von Willebrand factor type A (RefSeq), at 2,185,051 to 2,185,806 _2063 Dshi_2064: Dshi_2064 - GCN5-related N-acetyltransferase (RefSeq), at 2,185,839 to 2,186,339 _2064 Dshi_2065: Dshi_2065 - flavin reductase-like, FMN-binding (RefSeq), at 2,186,415 to 2,187,020 _2065 Position (kb) 2185 2186Strain fitness (log2 ratio) -2 -1 0 1at 2184.086 kb on - strand, within Dshi_2062at 2184.215 kb on - strand, within Dshi_2062at 2184.281 kb on - strand, within Dshi_2062at 2184.505 kb on - strand, within Dshi_2062at 2184.618 kb on - strand, within Dshi_2062at 2185.107 kb on - strandat 2185.173 kb on - strand, within Dshi_2063at 2185.173 kb on - strand, within Dshi_2063at 2185.192 kb on + strand, within Dshi_2063at 2185.200 kb on - strand, within Dshi_2063at 2185.292 kb on + strand, within Dshi_2063at 2185.697 kb on - strand, within Dshi_2063at 2185.730 kb on + strand, within Dshi_2063at 2185.792 kb on - strandat 2186.373 kb on + strandat 2186.417 kb on - strandat 2186.677 kb on + strand, within Dshi_2065at 2186.683 kb on - strand, within Dshi_2065at 2186.714 kb on + strand, within Dshi_2065

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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2,184,086 - Dshi_2062 0.57 -1.5
2,184,215 - Dshi_2062 0.63 -1.0
2,184,281 - Dshi_2062 0.66 -0.5
2,184,505 - Dshi_2062 0.75 -2.2
2,184,618 - Dshi_2062 0.81 +0.7
2,185,107 - -0.3
2,185,173 - Dshi_2063 0.16 -0.3
2,185,173 - Dshi_2063 0.16 -1.0
2,185,192 + Dshi_2063 0.19 -0.0
2,185,200 - Dshi_2063 0.20 +0.1
2,185,292 + Dshi_2063 0.32 -0.3
2,185,697 - Dshi_2063 0.85 -0.7
2,185,730 + Dshi_2063 0.90 -0.4
2,185,792 - -0.5
2,186,373 + -0.3
2,186,417 - -1.0
2,186,677 + Dshi_2065 0.43 +0.1
2,186,683 - Dshi_2065 0.44 +0.5
2,186,714 + Dshi_2065 0.49 +1.5

Or see this region's nucleotide sequence