Experiment: Carbon source D-Glucose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1655 and Dshi_1656 overlap by 4 nucleotides Dshi_1656 and Dshi_1657 overlap by 4 nucleotides Dshi_1657 and Dshi_1658 overlap by 4 nucleotides
Dshi_1655: Dshi_1655 - glucokinase (EC 2.7.1.2) (from data) , at 1,721,208 to 1,722,179
_1655
Dshi_1656: Dshi_1656 - ABC-3 protein (RefSeq), at 1,722,176 to 1,723,027
_1656
Dshi_1657: Dshi_1657 - ABC-3 protein (RefSeq), at 1,723,024 to 1,723,923
_1657
Dshi_1658: Dshi_1658 - ABC transporter related (RefSeq), at 1,723,920 to 1,724,816
_1658
Position (kb)
1722
1723
1724 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1721.284 kb on + strand at 1721.347 kb on + strand, within Dshi_1655 at 1721.411 kb on + strand, within Dshi_1655 at 1721.647 kb on + strand, within Dshi_1655 at 1721.925 kb on - strand, within Dshi_1655 at 1721.939 kb on + strand, within Dshi_1655 at 1722.208 kb on - strand at 1722.269 kb on - strand, within Dshi_1656 at 1722.364 kb on + strand, within Dshi_1656 at 1722.367 kb on - strand, within Dshi_1656 at 1722.447 kb on + strand, within Dshi_1656 at 1722.447 kb on + strand, within Dshi_1656 at 1722.447 kb on + strand, within Dshi_1656 at 1722.455 kb on - strand, within Dshi_1656 at 1722.455 kb on - strand, within Dshi_1656 at 1722.455 kb on - strand, within Dshi_1656 at 1722.455 kb on - strand, within Dshi_1656 at 1722.505 kb on + strand, within Dshi_1656 at 1722.740 kb on + strand, within Dshi_1656 at 1722.849 kb on + strand, within Dshi_1656 at 1722.935 kb on - strand, within Dshi_1656 at 1722.942 kb on + strand at 1723.043 kb on - strand at 1723.043 kb on - strand at 1723.066 kb on - strand at 1723.078 kb on - strand at 1723.091 kb on + strand at 1723.114 kb on + strand at 1723.236 kb on + strand, within Dshi_1657 at 1723.288 kb on - strand, within Dshi_1657 at 1723.335 kb on + strand, within Dshi_1657 at 1723.432 kb on + strand, within Dshi_1657 at 1723.515 kb on + strand, within Dshi_1657 at 1723.653 kb on + strand, within Dshi_1657 at 1723.683 kb on + strand, within Dshi_1657 at 1723.709 kb on + strand, within Dshi_1657 at 1723.783 kb on - strand, within Dshi_1657 at 1723.815 kb on + strand, within Dshi_1657 at 1723.845 kb on - strand at 1723.847 kb on + strand at 1723.855 kb on - strand at 1723.942 kb on + strand at 1723.952 kb on + strand at 1723.967 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM remove 1,721,284 + -3.2 1,721,347 + Dshi_1655 0.14 +1.2 1,721,411 + Dshi_1655 0.21 -1.6 1,721,647 + Dshi_1655 0.45 -3.5 1,721,925 - Dshi_1655 0.74 -2.2 1,721,939 + Dshi_1655 0.75 -2.3 1,722,208 - -1.2 1,722,269 - Dshi_1656 0.11 +0.0 1,722,364 + Dshi_1656 0.22 +0.8 1,722,367 - Dshi_1656 0.22 +0.5 1,722,447 + Dshi_1656 0.32 -0.2 1,722,447 + Dshi_1656 0.32 -0.5 1,722,447 + Dshi_1656 0.32 -1.8 1,722,455 - Dshi_1656 0.33 +0.1 1,722,455 - Dshi_1656 0.33 +0.5 1,722,455 - Dshi_1656 0.33 -0.0 1,722,455 - Dshi_1656 0.33 -1.0 1,722,505 + Dshi_1656 0.39 -0.8 1,722,740 + Dshi_1656 0.66 +0.4 1,722,849 + Dshi_1656 0.79 -0.8 1,722,935 - Dshi_1656 0.89 +0.6 1,722,942 + -0.0 1,723,043 - -0.3 1,723,043 - -0.2 1,723,066 - +0.1 1,723,078 - +0.0 1,723,091 + -0.1 1,723,114 + -0.6 1,723,236 + Dshi_1657 0.24 -1.0 1,723,288 - Dshi_1657 0.29 -2.3 1,723,335 + Dshi_1657 0.35 -0.3 1,723,432 + Dshi_1657 0.45 -1.7 1,723,515 + Dshi_1657 0.55 +1.0 1,723,653 + Dshi_1657 0.70 -0.2 1,723,683 + Dshi_1657 0.73 -1.6 1,723,709 + Dshi_1657 0.76 -0.3 1,723,783 - Dshi_1657 0.84 -1.2 1,723,815 + Dshi_1657 0.88 -1.8 1,723,845 - -2.3 1,723,847 + +0.1 1,723,855 - -1.6 1,723,942 + -0.3 1,723,952 + +0.7 1,723,967 + -0.2
Or see this region's nucleotide sequence