Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1051

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1049 and Dshi_1050 are separated by 7 nucleotidesDshi_1050 and Dshi_1051 overlap by 11 nucleotidesDshi_1051 and Dshi_1052 are separated by 425 nucleotides Dshi_1049: Dshi_1049 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,082,676 to 1,083,461 _1049 Dshi_1050: Dshi_1050 - hypothetical protein (RefSeq), at 1,083,469 to 1,083,843 _1050 Dshi_1051: Dshi_1051 - MmgE/PrpD family protein (RefSeq), at 1,083,833 to 1,085,182 _1051 Dshi_1052: Dshi_1052 - Spermidine/putrescine-binding periplasmic protein-like protein (RefSeq), at 1,085,608 to 1,086,777 _1052 Position (kb) 1083 1084 1085 1086Strain fitness (log2 ratio) -2 -1 0 1 2at 1082.836 kb on - strand, within Dshi_1049at 1082.860 kb on + strand, within Dshi_1049at 1082.872 kb on + strand, within Dshi_1049at 1082.874 kb on - strand, within Dshi_1049at 1082.931 kb on - strand, within Dshi_1049at 1082.936 kb on + strand, within Dshi_1049at 1083.009 kb on + strand, within Dshi_1049at 1083.062 kb on + strand, within Dshi_1049at 1083.118 kb on - strand, within Dshi_1049at 1083.357 kb on + strand, within Dshi_1049at 1083.466 kb on - strandat 1083.475 kb on - strandat 1083.486 kb on - strandat 1083.646 kb on + strand, within Dshi_1050at 1083.730 kb on - strand, within Dshi_1050at 1083.756 kb on - strand, within Dshi_1050at 1083.760 kb on + strand, within Dshi_1050at 1083.767 kb on - strand, within Dshi_1050at 1083.768 kb on - strand, within Dshi_1050at 1083.773 kb on + strand, within Dshi_1050at 1083.783 kb on + strand, within Dshi_1050at 1083.839 kb on - strandat 1084.029 kb on - strand, within Dshi_1051at 1084.224 kb on + strand, within Dshi_1051at 1084.224 kb on + strand, within Dshi_1051at 1084.232 kb on - strand, within Dshi_1051at 1084.370 kb on + strand, within Dshi_1051at 1084.438 kb on - strand, within Dshi_1051at 1084.452 kb on + strand, within Dshi_1051at 1084.452 kb on + strand, within Dshi_1051at 1084.460 kb on - strand, within Dshi_1051at 1084.487 kb on + strand, within Dshi_1051at 1084.553 kb on - strand, within Dshi_1051at 1084.553 kb on - strand, within Dshi_1051at 1084.807 kb on + strand, within Dshi_1051at 1084.945 kb on - strand, within Dshi_1051at 1085.119 kb on + strandat 1085.178 kb on + strandat 1085.186 kb on - strandat 1085.216 kb on - strandat 1085.415 kb on - strandat 1085.450 kb on - strandat 1085.452 kb on + strandat 1085.452 kb on + strandat 1085.452 kb on + strandat 1085.452 kb on + strandat 1085.452 kb on + strandat 1085.830 kb on + strand, within Dshi_1052at 1085.872 kb on + strand, within Dshi_1052at 1085.978 kb on + strand, within Dshi_1052at 1085.986 kb on - strand, within Dshi_1052at 1086.075 kb on - strand, within Dshi_1052at 1086.075 kb on - strand, within Dshi_1052at 1086.104 kb on + strand, within Dshi_1052at 1086.104 kb on + strand, within Dshi_1052at 1086.169 kb on + strand, within Dshi_1052

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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1,082,836 - Dshi_1049 0.20 -2.5
1,082,860 + Dshi_1049 0.23 -1.1
1,082,872 + Dshi_1049 0.25 +0.1
1,082,874 - Dshi_1049 0.25 -0.7
1,082,931 - Dshi_1049 0.32 +0.3
1,082,936 + Dshi_1049 0.33 -0.6
1,083,009 + Dshi_1049 0.42 -0.4
1,083,062 + Dshi_1049 0.49 +0.4
1,083,118 - Dshi_1049 0.56 -1.2
1,083,357 + Dshi_1049 0.87 +0.5
1,083,466 - -2.0
1,083,475 - -0.2
1,083,486 - +0.2
1,083,646 + Dshi_1050 0.47 -0.7
1,083,730 - Dshi_1050 0.70 -0.2
1,083,756 - Dshi_1050 0.77 +0.2
1,083,760 + Dshi_1050 0.78 -0.3
1,083,767 - Dshi_1050 0.79 +1.7
1,083,768 - Dshi_1050 0.80 +0.5
1,083,773 + Dshi_1050 0.81 +0.5
1,083,783 + Dshi_1050 0.84 -1.1
1,083,839 - +0.0
1,084,029 - Dshi_1051 0.15 -0.5
1,084,224 + Dshi_1051 0.29 -0.0
1,084,224 + Dshi_1051 0.29 -0.4
1,084,232 - Dshi_1051 0.30 -0.3
1,084,370 + Dshi_1051 0.40 +1.4
1,084,438 - Dshi_1051 0.45 -0.3
1,084,452 + Dshi_1051 0.46 -0.8
1,084,452 + Dshi_1051 0.46 -0.8
1,084,460 - Dshi_1051 0.46 -1.7
1,084,487 + Dshi_1051 0.48 -1.4
1,084,553 - Dshi_1051 0.53 -0.2
1,084,553 - Dshi_1051 0.53 -0.8
1,084,807 + Dshi_1051 0.72 -0.8
1,084,945 - Dshi_1051 0.82 -0.6
1,085,119 + -0.8
1,085,178 + -0.0
1,085,186 - +0.6
1,085,216 - -1.6
1,085,415 - +1.3
1,085,450 - +0.3
1,085,452 + -1.6
1,085,452 + -1.5
1,085,452 + -0.2
1,085,452 + -0.8
1,085,452 + +0.8
1,085,830 + Dshi_1052 0.19 -0.7
1,085,872 + Dshi_1052 0.23 -0.5
1,085,978 + Dshi_1052 0.32 +2.5
1,085,986 - Dshi_1052 0.32 +1.2
1,086,075 - Dshi_1052 0.40 -0.1
1,086,075 - Dshi_1052 0.40 -1.6
1,086,104 + Dshi_1052 0.42 -0.5
1,086,104 + Dshi_1052 0.42 +0.3
1,086,169 + Dshi_1052 0.48 +0.2

Or see this region's nucleotide sequence