Experiment: Carbon source D-Glucose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1049 and Dshi_1050 are separated by 7 nucleotides Dshi_1050 and Dshi_1051 overlap by 11 nucleotides Dshi_1051 and Dshi_1052 are separated by 425 nucleotides
Dshi_1049: Dshi_1049 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,082,676 to 1,083,461
_1049
Dshi_1050: Dshi_1050 - hypothetical protein (RefSeq), at 1,083,469 to 1,083,843
_1050
Dshi_1051: Dshi_1051 - MmgE/PrpD family protein (RefSeq), at 1,083,833 to 1,085,182
_1051
Dshi_1052: Dshi_1052 - Spermidine/putrescine-binding periplasmic protein-like protein (RefSeq), at 1,085,608 to 1,086,777
_1052
Position (kb)
1083
1084
1085
1086 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1082.836 kb on - strand, within Dshi_1049 at 1082.860 kb on + strand, within Dshi_1049 at 1082.872 kb on + strand, within Dshi_1049 at 1082.874 kb on - strand, within Dshi_1049 at 1082.931 kb on - strand, within Dshi_1049 at 1082.936 kb on + strand, within Dshi_1049 at 1083.009 kb on + strand, within Dshi_1049 at 1083.062 kb on + strand, within Dshi_1049 at 1083.118 kb on - strand, within Dshi_1049 at 1083.357 kb on + strand, within Dshi_1049 at 1083.466 kb on - strand at 1083.475 kb on - strand at 1083.486 kb on - strand at 1083.646 kb on + strand, within Dshi_1050 at 1083.730 kb on - strand, within Dshi_1050 at 1083.756 kb on - strand, within Dshi_1050 at 1083.760 kb on + strand, within Dshi_1050 at 1083.767 kb on - strand, within Dshi_1050 at 1083.768 kb on - strand, within Dshi_1050 at 1083.773 kb on + strand, within Dshi_1050 at 1083.783 kb on + strand, within Dshi_1050 at 1083.839 kb on - strand at 1084.029 kb on - strand, within Dshi_1051 at 1084.224 kb on + strand, within Dshi_1051 at 1084.224 kb on + strand, within Dshi_1051 at 1084.232 kb on - strand, within Dshi_1051 at 1084.370 kb on + strand, within Dshi_1051 at 1084.438 kb on - strand, within Dshi_1051 at 1084.452 kb on + strand, within Dshi_1051 at 1084.452 kb on + strand, within Dshi_1051 at 1084.460 kb on - strand, within Dshi_1051 at 1084.487 kb on + strand, within Dshi_1051 at 1084.553 kb on - strand, within Dshi_1051 at 1084.553 kb on - strand, within Dshi_1051 at 1084.807 kb on + strand, within Dshi_1051 at 1084.945 kb on - strand, within Dshi_1051 at 1085.119 kb on + strand at 1085.178 kb on + strand at 1085.186 kb on - strand at 1085.216 kb on - strand at 1085.415 kb on - strand at 1085.450 kb on - strand at 1085.452 kb on + strand at 1085.452 kb on + strand at 1085.452 kb on + strand at 1085.452 kb on + strand at 1085.452 kb on + strand at 1085.830 kb on + strand, within Dshi_1052 at 1085.872 kb on + strand, within Dshi_1052 at 1085.978 kb on + strand, within Dshi_1052 at 1085.986 kb on - strand, within Dshi_1052 at 1086.075 kb on - strand, within Dshi_1052 at 1086.075 kb on - strand, within Dshi_1052 at 1086.104 kb on + strand, within Dshi_1052 at 1086.104 kb on + strand, within Dshi_1052 at 1086.169 kb on + strand, within Dshi_1052
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM remove 1,082,836 - Dshi_1049 0.20 -2.5 1,082,860 + Dshi_1049 0.23 -1.1 1,082,872 + Dshi_1049 0.25 +0.1 1,082,874 - Dshi_1049 0.25 -0.7 1,082,931 - Dshi_1049 0.32 +0.3 1,082,936 + Dshi_1049 0.33 -0.6 1,083,009 + Dshi_1049 0.42 -0.4 1,083,062 + Dshi_1049 0.49 +0.4 1,083,118 - Dshi_1049 0.56 -1.2 1,083,357 + Dshi_1049 0.87 +0.5 1,083,466 - -2.0 1,083,475 - -0.2 1,083,486 - +0.2 1,083,646 + Dshi_1050 0.47 -0.7 1,083,730 - Dshi_1050 0.70 -0.2 1,083,756 - Dshi_1050 0.77 +0.2 1,083,760 + Dshi_1050 0.78 -0.3 1,083,767 - Dshi_1050 0.79 +1.7 1,083,768 - Dshi_1050 0.80 +0.5 1,083,773 + Dshi_1050 0.81 +0.5 1,083,783 + Dshi_1050 0.84 -1.1 1,083,839 - +0.0 1,084,029 - Dshi_1051 0.15 -0.5 1,084,224 + Dshi_1051 0.29 -0.0 1,084,224 + Dshi_1051 0.29 -0.4 1,084,232 - Dshi_1051 0.30 -0.3 1,084,370 + Dshi_1051 0.40 +1.4 1,084,438 - Dshi_1051 0.45 -0.3 1,084,452 + Dshi_1051 0.46 -0.8 1,084,452 + Dshi_1051 0.46 -0.8 1,084,460 - Dshi_1051 0.46 -1.7 1,084,487 + Dshi_1051 0.48 -1.4 1,084,553 - Dshi_1051 0.53 -0.2 1,084,553 - Dshi_1051 0.53 -0.8 1,084,807 + Dshi_1051 0.72 -0.8 1,084,945 - Dshi_1051 0.82 -0.6 1,085,119 + -0.8 1,085,178 + -0.0 1,085,186 - +0.6 1,085,216 - -1.6 1,085,415 - +1.3 1,085,450 - +0.3 1,085,452 + -1.6 1,085,452 + -1.5 1,085,452 + -0.2 1,085,452 + -0.8 1,085,452 + +0.8 1,085,830 + Dshi_1052 0.19 -0.7 1,085,872 + Dshi_1052 0.23 -0.5 1,085,978 + Dshi_1052 0.32 +2.5 1,085,986 - Dshi_1052 0.32 +1.2 1,086,075 - Dshi_1052 0.40 -0.1 1,086,075 - Dshi_1052 0.40 -1.6 1,086,104 + Dshi_1052 0.42 -0.5 1,086,104 + Dshi_1052 0.42 +0.3 1,086,169 + Dshi_1052 0.48 +0.2
Or see this region's nucleotide sequence