Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4386

Experiment: BHIS with Chlorpromazine 0.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT4385 and BT4386 are separated by 41 nucleotidesBT4386 and BT4387 are separated by 33 nucleotidesBT4387 and BT4388 are separated by 12 nucleotides BT4385: BT4385 - di-tripeptide ABC transporter (NCBI ptt file), at 5,778,289 to 5,779,833 BT4385 BT4386: BT4386 - hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file), at 5,779,875 to 5,780,411 BT4386 BT4387: BT4387 - adenylate kinase (ATP-AMP transphosphatase) (NCBI ptt file), at 5,780,445 to 5,781,014 BT4387 BT4388: BT4388 - GTP-binding protein (NCBI ptt file), at 5,781,027 to 5,782,193 BT4388 Position (kb) 5779 5780 5781Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5778.889 kb on - strand, within BT4385at 5778.999 kb on + strand, within BT4385at 5779.014 kb on + strand, within BT4385at 5779.063 kb on + strand, within BT4385at 5779.064 kb on - strand, within BT4385at 5779.164 kb on + strand, within BT4385at 5779.171 kb on - strand, within BT4385at 5779.179 kb on - strand, within BT4385at 5779.184 kb on - strand, within BT4385at 5779.250 kb on + strand, within BT4385at 5779.250 kb on + strand, within BT4385at 5779.350 kb on + strand, within BT4385at 5779.353 kb on + strand, within BT4385at 5779.362 kb on + strand, within BT4385at 5779.362 kb on + strand, within BT4385at 5779.479 kb on + strand, within BT4385at 5779.491 kb on - strand, within BT4385at 5779.491 kb on - strand, within BT4385at 5779.572 kb on + strand, within BT4385at 5779.579 kb on - strand, within BT4385at 5779.582 kb on - strand, within BT4385at 5779.627 kb on + strand, within BT4385at 5780.051 kb on + strand, within BT4386at 5780.188 kb on + strand, within BT4386at 5781.001 kb on + strandat 5781.012 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Chlorpromazine 0.1 mM
remove
5,778,889 - BT4385 0.39 -2.5
5,778,999 + BT4385 0.46 +3.7
5,779,014 + BT4385 0.47 -0.9
5,779,063 + BT4385 0.50 -0.5
5,779,064 - BT4385 0.50 -1.9
5,779,164 + BT4385 0.57 -0.9
5,779,171 - BT4385 0.57 -0.5
5,779,179 - BT4385 0.58 -2.9
5,779,184 - BT4385 0.58 +1.1
5,779,250 + BT4385 0.62 -0.4
5,779,250 + BT4385 0.62 -2.5
5,779,350 + BT4385 0.69 -0.5
5,779,353 + BT4385 0.69 -1.9
5,779,362 + BT4385 0.69 -3.4
5,779,362 + BT4385 0.69 -1.7
5,779,479 + BT4385 0.77 -1.5
5,779,491 - BT4385 0.78 -2.1
5,779,491 - BT4385 0.78 -0.5
5,779,572 + BT4385 0.83 +1.1
5,779,579 - BT4385 0.83 -1.4
5,779,582 - BT4385 0.84 +2.4
5,779,627 + BT4385 0.87 +0.1
5,780,051 + BT4386 0.33 -1.9
5,780,188 + BT4386 0.58 -1.7
5,781,001 + -0.5
5,781,012 + -3.2

Or see this region's nucleotide sequence