Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3922

Experiment: BHIS with Chlorpromazine 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3920 and BT3921 are separated by 42 nucleotidesBT3921 and BT3922 are separated by 25 nucleotidesBT3922 and BT3923 are separated by 7 nucleotidesBT3923 and BT3924 are separated by 0 nucleotides BT3920: BT3920 - conserved hypothetical protein (NCBI ptt file), at 5,094,547 to 5,094,876 BT3920 BT3921: BT3921 - hypothetical protein (NCBI ptt file), at 5,094,919 to 5,095,797 BT3921 BT3922: BT3922 - putative ThiJ family intracellular protease/amidase (NCBI ptt file), at 5,095,823 to 5,096,374 BT3922 BT3923: BT3923 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (NCBI ptt file), at 5,096,382 to 5,097,041 BT3923 BT3924: BT3924 - ATP-dependent DNA helicase recG (NCBI ptt file), at 5,097,042 to 5,099,138 BT3924 Position (kb) 5095 5096 5097Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5094.874 kb on + strandat 5094.883 kb on + strandat 5095.556 kb on + strand, within BT3921at 5095.585 kb on + strand, within BT3921at 5095.587 kb on + strand, within BT3921at 5095.620 kb on + strand, within BT3921at 5095.620 kb on + strand, within BT3921at 5095.777 kb on + strandat 5095.777 kb on + strandat 5095.798 kb on + strandat 5095.983 kb on + strand, within BT3922at 5096.053 kb on + strand, within BT3922at 5096.257 kb on + strand, within BT3922at 5096.257 kb on + strand, within BT3922at 5096.257 kb on + strand, within BT3922at 5096.287 kb on + strand, within BT3922at 5096.349 kb on + strandat 5096.843 kb on + strand, within BT3923

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Chlorpromazine 0.1 mM
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5,094,874 + -0.2
5,094,883 + +1.5
5,095,556 + BT3921 0.72 -1.0
5,095,585 + BT3921 0.76 -1.6
5,095,587 + BT3921 0.76 -2.5
5,095,620 + BT3921 0.80 +0.8
5,095,620 + BT3921 0.80 -0.4
5,095,777 + -2.9
5,095,777 + -0.2
5,095,798 + +1.3
5,095,983 + BT3922 0.29 -2.3
5,096,053 + BT3922 0.42 -5.5
5,096,257 + BT3922 0.79 -1.8
5,096,257 + BT3922 0.79 -2.8
5,096,257 + BT3922 0.79 -0.2
5,096,287 + BT3922 0.84 -1.3
5,096,349 + -2.3
5,096,843 + BT3923 0.70 -3.1

Or see this region's nucleotide sequence