Experiment: KB with Helenine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4915 and Psyr_4916 are separated by 295 nucleotides Psyr_4916 and Psyr_4917 are separated by 442 nucleotides
Psyr_4915: Psyr_4915 - conserved hypothetical protein, at 5,826,616 to 5,827,887
_4915
Psyr_4916: Psyr_4916 - conserved hypothetical protein, at 5,828,183 to 5,828,509
_4916
Psyr_4917: Psyr_4917 - Heat shock protein DnaJ, N-terminal, at 5,828,952 to 5,829,977
_4917
Position (kb) 5828
5829 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.363 kb on + strand, within Psyr_4915 at 5827.363 kb on + strand, within Psyr_4915 at 5827.364 kb on - strand, within Psyr_4915 at 5827.364 kb on - strand, within Psyr_4915 at 5827.364 kb on - strand, within Psyr_4915 at 5827.364 kb on - strand, within Psyr_4915 at 5827.364 kb on - strand, within Psyr_4915 at 5827.365 kb on + strand, within Psyr_4915 at 5827.487 kb on + strand, within Psyr_4915 at 5827.487 kb on + strand, within Psyr_4915 at 5827.488 kb on - strand, within Psyr_4915 at 5827.488 kb on - strand, within Psyr_4915 at 5827.488 kb on - strand, within Psyr_4915 at 5827.567 kb on + strand, within Psyr_4915 at 5827.567 kb on + strand, within Psyr_4915 at 5827.567 kb on + strand, within Psyr_4915 at 5827.567 kb on + strand, within Psyr_4915 at 5827.567 kb on + strand, within Psyr_4915 at 5827.568 kb on - strand, within Psyr_4915 at 5827.568 kb on - strand, within Psyr_4915 at 5827.568 kb on - strand, within Psyr_4915 at 5827.568 kb on - strand, within Psyr_4915 at 5827.568 kb on - strand, within Psyr_4915 at 5827.568 kb on - strand, within Psyr_4915 at 5827.568 kb on - strand, within Psyr_4915 at 5827.621 kb on + strand, within Psyr_4915 at 5827.622 kb on - strand, within Psyr_4915 at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.810 kb on + strand at 5827.810 kb on + strand at 5827.849 kb on - strand at 5827.849 kb on - strand at 5827.915 kb on - strand at 5827.915 kb on - strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.051 kb on - strand at 5828.051 kb on - strand at 5828.051 kb on - strand at 5828.051 kb on - strand at 5828.051 kb on - strand at 5828.051 kb on - strand at 5828.051 kb on - strand at 5828.051 kb on - strand at 5828.055 kb on - strand at 5828.091 kb on + strand at 5828.418 kb on + strand, within Psyr_4916 at 5828.418 kb on + strand, within Psyr_4916 at 5828.418 kb on + strand, within Psyr_4916 at 5828.418 kb on + strand, within Psyr_4916 at 5828.419 kb on - strand, within Psyr_4916 at 5828.419 kb on - strand, within Psyr_4916 at 5828.419 kb on - strand, within Psyr_4916 at 5828.419 kb on - strand, within Psyr_4916 at 5828.498 kb on + strand at 5828.498 kb on + strand at 5828.499 kb on - strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.599 kb on - strand at 5828.599 kb on - strand at 5828.599 kb on - strand at 5828.640 kb on + strand at 5828.640 kb on + strand at 5828.641 kb on - strand at 5828.688 kb on - strand at 5828.688 kb on - strand at 5828.688 kb on - strand at 5828.688 kb on - strand at 5828.688 kb on - strand at 5828.707 kb on - strand at 5828.723 kb on - strand at 5828.723 kb on - strand at 5828.743 kb on + strand at 5828.743 kb on + strand at 5828.743 kb on + strand at 5828.743 kb on + strand at 5828.743 kb on + strand at 5828.744 kb on - strand at 5828.744 kb on - strand at 5828.744 kb on - strand at 5828.744 kb on - strand at 5828.744 kb on - strand at 5828.744 kb on - strand at 5828.760 kb on - strand at 5828.760 kb on - strand at 5828.861 kb on + strand at 5828.861 kb on + strand at 5828.862 kb on - strand at 5828.862 kb on - strand at 5828.890 kb on + strand at 5828.920 kb on - strand at 5828.953 kb on + strand at 5828.953 kb on + strand at 5828.953 kb on + strand at 5828.954 kb on - strand at 5829.022 kb on + strand at 5829.022 kb on + strand at 5829.022 kb on + strand at 5829.022 kb on + strand at 5829.022 kb on + strand at 5829.022 kb on + strand at 5829.023 kb on - strand at 5829.023 kb on - strand at 5829.112 kb on + strand, within Psyr_4917 at 5829.112 kb on + strand, within Psyr_4917 at 5829.112 kb on + strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.124 kb on + strand, within Psyr_4917 at 5829.125 kb on - strand, within Psyr_4917 at 5829.125 kb on - strand, within Psyr_4917 at 5829.223 kb on + strand, within Psyr_4917 at 5829.223 kb on + strand, within Psyr_4917 at 5829.224 kb on - strand, within Psyr_4917 at 5829.224 kb on - strand, within Psyr_4917 at 5829.224 kb on - strand, within Psyr_4917 at 5829.224 kb on - strand, within Psyr_4917 at 5829.224 kb on - strand, within Psyr_4917 at 5829.304 kb on + strand, within Psyr_4917 at 5829.305 kb on - strand, within Psyr_4917 at 5829.305 kb on - strand, within Psyr_4917 at 5829.305 kb on - strand, within Psyr_4917 at 5829.305 kb on - strand, within Psyr_4917 at 5829.399 kb on + strand, within Psyr_4917
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Helenine 10 mM remove 5,827,263 + Psyr_4915 0.51 +0.4 5,827,263 + Psyr_4915 0.51 +0.5 5,827,263 + Psyr_4915 0.51 +0.3 5,827,263 + Psyr_4915 0.51 +0.2 5,827,263 + Psyr_4915 0.51 -0.6 5,827,263 + Psyr_4915 0.51 -0.4 5,827,263 + Psyr_4915 0.51 -0.9 5,827,263 + Psyr_4915 0.51 +0.6 5,827,263 + Psyr_4915 0.51 -0.6 5,827,263 + Psyr_4915 0.51 -1.2 5,827,263 + Psyr_4915 0.51 +0.4 5,827,264 - Psyr_4915 0.51 -1.4 5,827,264 - Psyr_4915 0.51 +0.0 5,827,264 - Psyr_4915 0.51 -0.3 5,827,264 - Psyr_4915 0.51 +0.1 5,827,264 - Psyr_4915 0.51 +1.0 5,827,264 - Psyr_4915 0.51 +1.1 5,827,264 - Psyr_4915 0.51 -0.1 5,827,264 - Psyr_4915 0.51 -0.0 5,827,264 - Psyr_4915 0.51 +1.8 5,827,264 - Psyr_4915 0.51 +0.9 5,827,264 - Psyr_4915 0.51 -1.3 5,827,264 - Psyr_4915 0.51 +0.5 5,827,264 - Psyr_4915 0.51 +0.7 5,827,363 + Psyr_4915 0.59 -0.4 5,827,363 + Psyr_4915 0.59 -0.1 5,827,364 - Psyr_4915 0.59 -1.1 5,827,364 - Psyr_4915 0.59 +0.2 5,827,364 - Psyr_4915 0.59 -0.3 5,827,364 - Psyr_4915 0.59 +0.6 5,827,364 - Psyr_4915 0.59 -1.2 5,827,365 + Psyr_4915 0.59 -1.6 5,827,487 + Psyr_4915 0.68 +0.6 5,827,487 + Psyr_4915 0.68 +3.2 5,827,488 - Psyr_4915 0.69 +1.2 5,827,488 - Psyr_4915 0.69 -0.2 5,827,488 - Psyr_4915 0.69 -0.3 5,827,567 + Psyr_4915 0.75 +0.6 5,827,567 + Psyr_4915 0.75 -0.2 5,827,567 + Psyr_4915 0.75 -0.7 5,827,567 + Psyr_4915 0.75 +0.1 5,827,567 + Psyr_4915 0.75 +0.7 5,827,568 - Psyr_4915 0.75 -0.3 5,827,568 - Psyr_4915 0.75 -1.9 5,827,568 - Psyr_4915 0.75 +0.1 5,827,568 - Psyr_4915 0.75 -0.1 5,827,568 - Psyr_4915 0.75 -1.0 5,827,568 - Psyr_4915 0.75 +0.4 5,827,568 - Psyr_4915 0.75 +0.7 5,827,621 + Psyr_4915 0.79 +1.0 5,827,622 - Psyr_4915 0.79 +0.5 5,827,792 + +1.2 5,827,792 + +0.3 5,827,792 + -0.6 5,827,792 + +0.4 5,827,792 + +0.1 5,827,792 + -1.6 5,827,792 + +0.4 5,827,792 + +0.2 5,827,792 + +2.2 5,827,792 + -1.4 5,827,792 + -0.5 5,827,792 + -2.8 5,827,792 + +2.0 5,827,792 + -1.8 5,827,792 + -0.3 5,827,792 + -0.5 5,827,792 + +1.5 5,827,792 + +1.0 5,827,792 + -0.7 5,827,793 - -1.1 5,827,793 - +1.7 5,827,793 - -0.0 5,827,793 - +1.7 5,827,793 - +0.2 5,827,793 - -0.1 5,827,793 - +0.1 5,827,793 - +0.8 5,827,793 - -0.0 5,827,793 - -0.3 5,827,793 - -0.3 5,827,793 - +0.5 5,827,810 + +0.7 5,827,810 + +0.2 5,827,849 - -1.7 5,827,849 - -0.2 5,827,915 - -0.5 5,827,915 - -1.0 5,828,050 + +0.7 5,828,050 + +0.3 5,828,050 + -0.9 5,828,050 + -0.3 5,828,050 + +0.9 5,828,050 + +1.3 5,828,050 + +3.4 5,828,050 + +1.2 5,828,050 + +0.1 5,828,050 + -0.8 5,828,051 - +0.2 5,828,051 - -0.5 5,828,051 - +0.1 5,828,051 - -0.2 5,828,051 - -0.5 5,828,051 - -1.3 5,828,051 - +2.2 5,828,051 - -1.3 5,828,055 - -0.1 5,828,091 + -3.0 5,828,418 + Psyr_4916 0.72 +0.8 5,828,418 + Psyr_4916 0.72 -0.2 5,828,418 + Psyr_4916 0.72 -1.3 5,828,418 + Psyr_4916 0.72 -1.1 5,828,419 - Psyr_4916 0.72 -0.1 5,828,419 - Psyr_4916 0.72 -1.8 5,828,419 - Psyr_4916 0.72 -1.2 5,828,419 - Psyr_4916 0.72 -1.2 5,828,498 + +0.6 5,828,498 + +0.0 5,828,499 - -0.5 5,828,513 + -3.0 5,828,513 + -0.6 5,828,513 + -0.7 5,828,513 + +0.3 5,828,513 + -0.8 5,828,513 + -2.5 5,828,513 + +0.2 5,828,513 + +1.2 5,828,513 + -0.6 5,828,513 + +0.7 5,828,513 + -0.8 5,828,513 + -0.3 5,828,513 + -0.8 5,828,513 + -0.6 5,828,513 + -2.8 5,828,514 - -0.2 5,828,514 - +0.5 5,828,514 - +0.4 5,828,514 - +0.3 5,828,514 - -0.4 5,828,514 - -0.1 5,828,514 - +0.2 5,828,514 - -0.3 5,828,514 - +1.0 5,828,514 - +0.2 5,828,599 - +0.2 5,828,599 - +0.7 5,828,599 - -0.4 5,828,640 + -1.8 5,828,640 + +0.8 5,828,641 - +0.4 5,828,688 - -1.0 5,828,688 - +3.6 5,828,688 - -2.8 5,828,688 - -0.6 5,828,688 - -0.4 5,828,707 - -0.2 5,828,723 - -0.3 5,828,723 - +0.5 5,828,743 + +0.8 5,828,743 + -2.1 5,828,743 + +0.0 5,828,743 + +0.0 5,828,743 + -1.7 5,828,744 - -2.3 5,828,744 - -0.1 5,828,744 - +0.6 5,828,744 - +0.4 5,828,744 - -1.4 5,828,744 - -0.4 5,828,760 - +0.1 5,828,760 - -0.3 5,828,861 + +1.4 5,828,861 + -1.0 5,828,862 - -0.2 5,828,862 - +0.5 5,828,890 + -0.9 5,828,920 - +0.1 5,828,953 + +1.7 5,828,953 + +0.5 5,828,953 + +0.2 5,828,954 - -0.4 5,829,022 + -1.0 5,829,022 + +0.8 5,829,022 + -0.5 5,829,022 + -0.5 5,829,022 + +0.1 5,829,022 + +1.2 5,829,023 - +1.1 5,829,023 - -0.2 5,829,112 + Psyr_4917 0.16 -0.1 5,829,112 + Psyr_4917 0.16 +2.2 5,829,112 + Psyr_4917 0.16 -1.0 5,829,113 - Psyr_4917 0.16 +0.3 5,829,113 - Psyr_4917 0.16 -0.4 5,829,113 - Psyr_4917 0.16 +0.2 5,829,113 - Psyr_4917 0.16 -0.6 5,829,113 - Psyr_4917 0.16 +0.3 5,829,113 - Psyr_4917 0.16 -0.6 5,829,113 - Psyr_4917 0.16 +1.1 5,829,113 - Psyr_4917 0.16 +1.1 5,829,124 + Psyr_4917 0.17 +0.5 5,829,125 - Psyr_4917 0.17 +1.0 5,829,125 - Psyr_4917 0.17 -0.7 5,829,223 + Psyr_4917 0.26 -0.5 5,829,223 + Psyr_4917 0.26 +0.4 5,829,224 - Psyr_4917 0.27 -0.2 5,829,224 - Psyr_4917 0.27 +0.1 5,829,224 - Psyr_4917 0.27 -0.2 5,829,224 - Psyr_4917 0.27 -0.6 5,829,224 - Psyr_4917 0.27 -0.1 5,829,304 + Psyr_4917 0.34 -0.7 5,829,305 - Psyr_4917 0.34 +0.6 5,829,305 - Psyr_4917 0.34 -2.1 5,829,305 - Psyr_4917 0.34 -0.0 5,829,305 - Psyr_4917 0.34 -1.1 5,829,399 + Psyr_4917 0.44 -1.2
Or see this region's nucleotide sequence