Experiment: KB with Helenine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4901 and Psyr_4902 overlap by 4 nucleotides Psyr_4902 and Psyr_RNA76 are separated by 101 nucleotides Psyr_RNA76 and Psyr_4903 are separated by 460 nucleotides
Psyr_4901: Psyr_4901 - A/G-specific DNA-adenine glycosylase, at 5,814,937 to 5,816,004
_4901
Psyr_4902: Psyr_4902 - Protein of unknown function DUF495, at 5,816,001 to 5,816,273
_4902
Psyr_RNA76: Psyr_RNA76 - tRNA-Phe, at 5,816,375 to 5,816,450
_RNA76
Psyr_4903: Psyr_4903 - hypothetical protein, at 5,816,911 to 5,818,032
_4903
Position (kb) 5816
5817 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5815.087 kb on + strand, within Psyr_4901 at 5815.087 kb on + strand, within Psyr_4901 at 5815.087 kb on + strand, within Psyr_4901 at 5815.088 kb on - strand, within Psyr_4901 at 5815.154 kb on + strand, within Psyr_4901 at 5815.154 kb on + strand, within Psyr_4901 at 5815.154 kb on + strand, within Psyr_4901 at 5815.154 kb on + strand, within Psyr_4901 at 5815.154 kb on + strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.183 kb on + strand, within Psyr_4901 at 5815.183 kb on + strand, within Psyr_4901 at 5815.183 kb on + strand, within Psyr_4901 at 5815.184 kb on - strand, within Psyr_4901 at 5815.184 kb on - strand, within Psyr_4901 at 5815.184 kb on - strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.475 kb on - strand, within Psyr_4901 at 5815.475 kb on - strand, within Psyr_4901 at 5815.475 kb on - strand, within Psyr_4901 at 5815.809 kb on + strand, within Psyr_4901 at 5815.810 kb on - strand, within Psyr_4901 at 5815.906 kb on + strand at 5815.906 kb on + strand at 5815.907 kb on - strand at 5815.907 kb on - strand at 5815.908 kb on + strand at 5815.908 kb on + strand at 5815.908 kb on + strand at 5815.909 kb on - strand at 5815.909 kb on - strand at 5815.979 kb on + strand at 5815.979 kb on + strand at 5815.979 kb on + strand at 5815.980 kb on - strand at 5815.980 kb on - strand at 5815.980 kb on - strand at 5815.980 kb on - strand at 5816.015 kb on - strand at 5816.029 kb on - strand, within Psyr_4902 at 5816.029 kb on - strand, within Psyr_4902 at 5816.190 kb on - strand, within Psyr_4902 at 5816.190 kb on - strand, within Psyr_4902 at 5816.190 kb on - strand, within Psyr_4902 at 5816.190 kb on - strand, within Psyr_4902 at 5816.235 kb on + strand, within Psyr_4902 at 5816.311 kb on - strand at 5816.594 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.662 kb on - strand at 5816.662 kb on - strand at 5816.662 kb on - strand at 5816.662 kb on - strand at 5816.662 kb on - strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.664 kb on - strand at 5816.664 kb on - strand at 5816.664 kb on - strand at 5816.664 kb on - strand at 5816.664 kb on - strand at 5816.664 kb on - strand at 5816.706 kb on + strand at 5816.744 kb on + strand at 5816.744 kb on + strand at 5816.745 kb on - strand at 5816.745 kb on - strand at 5816.773 kb on + strand at 5816.773 kb on + strand at 5816.773 kb on + strand at 5816.773 kb on + strand at 5816.774 kb on - strand at 5816.774 kb on - strand at 5816.797 kb on - strand at 5816.812 kb on - strand at 5816.876 kb on + strand at 5816.877 kb on - strand at 5816.878 kb on + strand at 5816.878 kb on + strand at 5816.878 kb on + strand at 5816.878 kb on + strand at 5816.878 kb on + strand at 5816.879 kb on - strand at 5816.879 kb on - strand at 5816.879 kb on - strand at 5816.879 kb on - strand at 5816.879 kb on - strand at 5816.894 kb on + strand at 5816.894 kb on + strand at 5816.895 kb on - strand at 5816.964 kb on + strand at 5816.965 kb on - strand at 5816.965 kb on - strand at 5816.965 kb on - strand at 5817.041 kb on + strand, within Psyr_4903 at 5817.041 kb on + strand, within Psyr_4903 at 5817.089 kb on + strand, within Psyr_4903 at 5817.089 kb on + strand, within Psyr_4903 at 5817.090 kb on - strand, within Psyr_4903 at 5817.090 kb on - strand, within Psyr_4903 at 5817.090 kb on - strand, within Psyr_4903 at 5817.095 kb on + strand, within Psyr_4903 at 5817.148 kb on + strand, within Psyr_4903 at 5817.149 kb on - strand, within Psyr_4903 at 5817.149 kb on - strand, within Psyr_4903 at 5817.149 kb on - strand, within Psyr_4903 at 5817.149 kb on - strand, within Psyr_4903 at 5817.170 kb on + strand, within Psyr_4903 at 5817.171 kb on - strand, within Psyr_4903 at 5817.171 kb on - strand, within Psyr_4903 at 5817.171 kb on - strand, within Psyr_4903 at 5817.171 kb on - strand, within Psyr_4903 at 5817.171 kb on - strand, within Psyr_4903 at 5817.171 kb on - strand, within Psyr_4903 at 5817.183 kb on + strand, within Psyr_4903 at 5817.258 kb on + strand, within Psyr_4903 at 5817.269 kb on + strand, within Psyr_4903 at 5817.269 kb on + strand, within Psyr_4903 at 5817.270 kb on - strand, within Psyr_4903 at 5817.270 kb on - strand, within Psyr_4903
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Helenine 10 mM remove 5,815,087 + Psyr_4901 0.14 +1.8 5,815,087 + Psyr_4901 0.14 -1.4 5,815,087 + Psyr_4901 0.14 +0.0 5,815,088 - Psyr_4901 0.14 +0.2 5,815,154 + Psyr_4901 0.20 -0.5 5,815,154 + Psyr_4901 0.20 -0.1 5,815,154 + Psyr_4901 0.20 -0.7 5,815,154 + Psyr_4901 0.20 -1.0 5,815,154 + Psyr_4901 0.20 +0.4 5,815,155 - Psyr_4901 0.20 +0.8 5,815,155 - Psyr_4901 0.20 -1.3 5,815,155 - Psyr_4901 0.20 +0.2 5,815,155 - Psyr_4901 0.20 +1.1 5,815,155 - Psyr_4901 0.20 -1.3 5,815,155 - Psyr_4901 0.20 -1.1 5,815,155 - Psyr_4901 0.20 +0.7 5,815,155 - Psyr_4901 0.20 -0.8 5,815,183 + Psyr_4901 0.23 +2.0 5,815,183 + Psyr_4901 0.23 +1.1 5,815,183 + Psyr_4901 0.23 -0.7 5,815,184 - Psyr_4901 0.23 -0.6 5,815,184 - Psyr_4901 0.23 -1.8 5,815,184 - Psyr_4901 0.23 -0.3 5,815,474 + Psyr_4901 0.50 -0.8 5,815,474 + Psyr_4901 0.50 -0.8 5,815,474 + Psyr_4901 0.50 +4.2 5,815,474 + Psyr_4901 0.50 +0.4 5,815,474 + Psyr_4901 0.50 +0.1 5,815,474 + Psyr_4901 0.50 -1.8 5,815,474 + Psyr_4901 0.50 -0.2 5,815,474 + Psyr_4901 0.50 -1.2 5,815,475 - Psyr_4901 0.50 +0.2 5,815,475 - Psyr_4901 0.50 +0.8 5,815,475 - Psyr_4901 0.50 +0.9 5,815,809 + Psyr_4901 0.82 +0.6 5,815,810 - Psyr_4901 0.82 +0.3 5,815,906 + +0.8 5,815,906 + -0.2 5,815,907 - +0.2 5,815,907 - +0.1 5,815,908 + -0.0 5,815,908 + +0.8 5,815,908 + -2.8 5,815,909 - -0.4 5,815,909 - -0.4 5,815,979 + -0.0 5,815,979 + -0.1 5,815,979 + -0.4 5,815,980 - +0.4 5,815,980 - -0.5 5,815,980 - +0.4 5,815,980 - +3.0 5,816,015 - -1.6 5,816,029 - Psyr_4902 0.10 +0.4 5,816,029 - Psyr_4902 0.10 -0.2 5,816,190 - Psyr_4902 0.69 +0.6 5,816,190 - Psyr_4902 0.69 -0.0 5,816,190 - Psyr_4902 0.69 -1.8 5,816,190 - Psyr_4902 0.69 +1.9 5,816,235 + Psyr_4902 0.86 +1.2 5,816,311 - -1.1 5,816,594 + +0.5 5,816,661 + -0.2 5,816,661 + +0.1 5,816,661 + -0.3 5,816,661 + -0.0 5,816,661 + -0.3 5,816,661 + +0.7 5,816,661 + +1.9 5,816,661 + +0.4 5,816,661 + +0.4 5,816,662 - -0.1 5,816,662 - +0.6 5,816,662 - -0.0 5,816,662 - -1.2 5,816,662 - -0.3 5,816,663 + -0.2 5,816,663 + +0.5 5,816,663 + -0.2 5,816,663 + +1.1 5,816,663 + +0.1 5,816,663 + -0.5 5,816,663 + +0.2 5,816,663 + +0.1 5,816,663 + -1.2 5,816,663 + +0.2 5,816,663 + -0.3 5,816,663 + -0.1 5,816,663 + -0.3 5,816,663 + +1.2 5,816,664 - -0.2 5,816,664 - -0.5 5,816,664 - -0.6 5,816,664 - -1.8 5,816,664 - -0.9 5,816,664 - -0.3 5,816,706 + -0.3 5,816,744 + -1.1 5,816,744 + -0.2 5,816,745 - +0.0 5,816,745 - -0.6 5,816,773 + -2.8 5,816,773 + -1.2 5,816,773 + +0.3 5,816,773 + +0.8 5,816,774 - +0.5 5,816,774 - +0.8 5,816,797 - +1.7 5,816,812 - -0.4 5,816,876 + +0.8 5,816,877 - -0.3 5,816,878 + -0.4 5,816,878 + +0.7 5,816,878 + +0.0 5,816,878 + +0.1 5,816,878 + +0.8 5,816,879 - +0.2 5,816,879 - +0.7 5,816,879 - +1.2 5,816,879 - -0.5 5,816,879 - -0.3 5,816,894 + -1.9 5,816,894 + -0.4 5,816,895 - -1.9 5,816,964 + +0.2 5,816,965 - -1.6 5,816,965 - -0.6 5,816,965 - +0.1 5,817,041 + Psyr_4903 0.12 -0.4 5,817,041 + Psyr_4903 0.12 +1.2 5,817,089 + Psyr_4903 0.16 -0.5 5,817,089 + Psyr_4903 0.16 -1.8 5,817,090 - Psyr_4903 0.16 +0.7 5,817,090 - Psyr_4903 0.16 -0.8 5,817,090 - Psyr_4903 0.16 -0.7 5,817,095 + Psyr_4903 0.16 -0.1 5,817,148 + Psyr_4903 0.21 -0.2 5,817,149 - Psyr_4903 0.21 +0.5 5,817,149 - Psyr_4903 0.21 -0.4 5,817,149 - Psyr_4903 0.21 -0.8 5,817,149 - Psyr_4903 0.21 +2.2 5,817,170 + Psyr_4903 0.23 -1.0 5,817,171 - Psyr_4903 0.23 -0.6 5,817,171 - Psyr_4903 0.23 -0.7 5,817,171 - Psyr_4903 0.23 +0.9 5,817,171 - Psyr_4903 0.23 -0.9 5,817,171 - Psyr_4903 0.23 -0.1 5,817,171 - Psyr_4903 0.23 -1.1 5,817,183 + Psyr_4903 0.24 -0.0 5,817,258 + Psyr_4903 0.31 -0.4 5,817,269 + Psyr_4903 0.32 +0.4 5,817,269 + Psyr_4903 0.32 -1.8 5,817,270 - Psyr_4903 0.32 -1.5 5,817,270 - Psyr_4903 0.32 -0.8
Or see this region's nucleotide sequence