Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2567

Experiment: KB with Helenine 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2566 and Psyr_2567 are separated by 40 nucleotidesPsyr_2567 and Psyr_2568 are separated by 29 nucleotidesPsyr_2568 and Psyr_2569 are separated by 208 nucleotides Psyr_2566: Psyr_2566 - dihydroxyacetone kinase DhaK subunit, at 2,979,654 to 2,980,655 _2566 Psyr_2567: Psyr_2567 - Zinc-containing alcohol dehydrogenase superfamily, at 2,980,696 to 2,981,811 _2567 Psyr_2568: Psyr_2568 - Short-chain dehydrogenase/reductase SDR, at 2,981,841 to 2,982,596 _2568 Psyr_2569: Psyr_2569 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 2,982,805 to 2,983,815 _2569 Position (kb) 2980 2981 2982Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2979.770 kb on - strand, within Psyr_2566at 2979.770 kb on - strand, within Psyr_2566at 2979.770 kb on - strand, within Psyr_2566at 2979.770 kb on - strand, within Psyr_2566at 2979.770 kb on - strand, within Psyr_2566at 2979.781 kb on + strand, within Psyr_2566at 2979.781 kb on + strand, within Psyr_2566at 2979.782 kb on - strand, within Psyr_2566at 2979.891 kb on + strand, within Psyr_2566at 2980.563 kb on - strandat 2980.682 kb on - strandat 2980.726 kb on - strandat 2980.848 kb on - strand, within Psyr_2567at 2980.848 kb on - strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.012 kb on - strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.358 kb on - strand, within Psyr_2567at 2981.358 kb on - strand, within Psyr_2567at 2981.397 kb on - strand, within Psyr_2567at 2981.624 kb on + strand, within Psyr_2567at 2981.625 kb on - strand, within Psyr_2567at 2981.871 kb on + strandat 2981.932 kb on - strand, within Psyr_2568at 2982.643 kb on - strandat 2982.727 kb on + strandat 2982.727 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Helenine 10 mM
remove
2,979,770 - Psyr_2566 0.12 -2.1
2,979,770 - Psyr_2566 0.12 -0.8
2,979,770 - Psyr_2566 0.12 -0.2
2,979,770 - Psyr_2566 0.12 -0.7
2,979,770 - Psyr_2566 0.12 +0.7
2,979,781 + Psyr_2566 0.13 +2.9
2,979,781 + Psyr_2566 0.13 +1.0
2,979,782 - Psyr_2566 0.13 -1.4
2,979,891 + Psyr_2566 0.24 +0.4
2,980,563 - +1.0
2,980,682 - +0.4
2,980,726 - +0.3
2,980,848 - Psyr_2567 0.14 +0.6
2,980,848 - Psyr_2567 0.14 +0.8
2,981,011 + Psyr_2567 0.28 -0.3
2,981,011 + Psyr_2567 0.28 -0.4
2,981,011 + Psyr_2567 0.28 -2.0
2,981,011 + Psyr_2567 0.28 -1.6
2,981,011 + Psyr_2567 0.28 -0.1
2,981,011 + Psyr_2567 0.28 -1.5
2,981,011 + Psyr_2567 0.28 -2.5
2,981,011 + Psyr_2567 0.28 -1.1
2,981,012 - Psyr_2567 0.28 -0.5
2,981,015 + Psyr_2567 0.29 +1.0
2,981,015 + Psyr_2567 0.29 -0.7
2,981,015 + Psyr_2567 0.29 -0.5
2,981,015 + Psyr_2567 0.29 +0.3
2,981,015 + Psyr_2567 0.29 -0.6
2,981,015 + Psyr_2567 0.29 -0.2
2,981,015 + Psyr_2567 0.29 +1.6
2,981,015 + Psyr_2567 0.29 -0.3
2,981,015 + Psyr_2567 0.29 -0.9
2,981,015 + Psyr_2567 0.29 -0.6
2,981,015 + Psyr_2567 0.29 -0.6
2,981,016 - Psyr_2567 0.29 -0.5
2,981,016 - Psyr_2567 0.29 +0.7
2,981,016 - Psyr_2567 0.29 -1.4
2,981,016 - Psyr_2567 0.29 +1.3
2,981,016 - Psyr_2567 0.29 -1.5
2,981,016 - Psyr_2567 0.29 +3.4
2,981,016 - Psyr_2567 0.29 +1.0
2,981,016 - Psyr_2567 0.29 +0.3
2,981,016 - Psyr_2567 0.29 -0.3
2,981,016 - Psyr_2567 0.29 -0.5
2,981,358 - Psyr_2567 0.59 -0.1
2,981,358 - Psyr_2567 0.59 -0.8
2,981,397 - Psyr_2567 0.63 -0.5
2,981,624 + Psyr_2567 0.83 +0.5
2,981,625 - Psyr_2567 0.83 +0.3
2,981,871 + -0.1
2,981,932 - Psyr_2568 0.12 +1.0
2,982,643 - +0.2
2,982,727 + +0.3
2,982,727 + +2.4

Or see this region's nucleotide sequence