Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1888

Experiment: KB with Helenine 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Helenine 10 mM
2,157,215	+		Psyr_1886	0.76	+0.8
2,157,219	+		Psyr_1886	0.76	-0.1
2,157,219	+		Psyr_1886	0.76	+1.2
2,157,220	-		Psyr_1886	0.76	+0.0
2,157,220	-		Psyr_1886	0.76	-1.0
2,157,220	-		Psyr_1886	0.76	-1.2
2,157,220	-		Psyr_1886	0.76	-0.6
2,157,220	-		Psyr_1886	0.76	+0.1
2,157,230	-		Psyr_1886	0.77	+1.4
2,157,288	-		Psyr_1886	0.81	+0.8
2,157,288	-		Psyr_1886	0.81	-1.0
2,157,367	+		Psyr_1886	0.86	-1.1
2,157,367	+		Psyr_1886	0.86	+1.8
2,157,391	+		Psyr_1886	0.88	+0.8
2,157,391	+		Psyr_1886	0.88	+0.8
2,157,392	-		Psyr_1886	0.88	-0.3
2,157,392	-		Psyr_1886	0.88	-0.4
2,157,404	-		Psyr_1886	0.89	-0.2
2,157,459	+				-0.3
2,157,460	-				+1.1
2,157,460	-				+0.0
2,157,552	+				-0.7
2,157,553	-				+2.1
2,157,553	-				-0.7
2,157,576	+				-1.8
2,157,577	-				-1.6
2,157,606	-				-1.3
2,157,652	+				-1.3
2,157,653	-				-1.0
2,157,653	-				+0.7
2,157,741	+				-0.8
2,157,746	-				-0.9
2,157,798	-				+0.6
2,157,800	+				+0.7
2,157,809	+				-1.3
2,157,809	+				+4.1
2,157,809	+				+1.8
2,157,809	+				+0.0
2,157,810	-				-0.2
2,157,810	-				+0.6
2,157,810	-				+0.0
2,157,810	-				+0.4
2,157,810	-				+0.6
2,157,810	-				-0.8
2,157,810	-				-0.5
2,157,810	-				-0.7
2,157,810	-				+0.6
2,157,811	+				+0.7
2,157,811	+				+0.4
2,157,811	+				-2.0
2,157,811	+				-0.2
2,157,812	-				+0.1
2,157,812	-				-1.2
2,157,812	-				-2.9
2,157,812	-				-0.6
2,157,841	+		Psyr_1887	0.12	+0.4
2,157,842	-		Psyr_1887	0.13	+0.4
2,157,842	-		Psyr_1887	0.13	-0.4
2,157,877	+		Psyr_1887	0.42	-1.5
2,157,880	+		Psyr_1887	0.45	-0.1
2,157,934	+				+1.4
2,157,934	+				-0.8
2,157,934	+				-1.8
2,157,934	+				-1.6
2,157,934	+				-0.7
2,157,935	-				+0.5
2,157,935	-				+0.1
2,157,935	-				-0.8
2,157,935	-				-1.0
2,157,946	+				-0.7
2,157,946	+				+0.2
2,157,946	+				-0.0
2,157,947	-				-1.3
2,157,947	-				+1.2
2,157,947	-				-0.3
2,157,947	-				-0.6
2,157,947	-				+0.5
2,157,951	+				-1.8
2,157,951	+				-0.3
2,158,013	+				+1.8
2,158,013	+				+0.4
2,158,013	+				+0.2
2,158,026	+				+0.8
2,158,026	+				-2.5
2,158,026	+				-0.8
2,158,026	+				-1.1
2,158,026	+				+0.2
2,158,116	+				-0.4
2,158,138	+				+0.2
2,158,138	+				+1.6
2,158,138	+				+0.8
2,158,138	+				+1.8
2,158,139	-				-0.2
2,158,139	-				+1.2
2,158,139	-				-0.5
2,158,139	-				-0.4
2,158,139	-				-0.6
2,158,139	-				+3.1
2,158,197	-		Psyr_1888	0.11	+0.5
2,158,197	-		Psyr_1888	0.11	-0.1
2,158,197	-		Psyr_1888	0.11	-0.6
2,158,288	+		Psyr_1888	0.23	+0.8
2,158,288	+		Psyr_1888	0.23	+0.1
2,158,294	+		Psyr_1888	0.24	+2.0
2,158,410	-		Psyr_1888	0.39	+0.3
2,158,410	-		Psyr_1888	0.39	+1.5
2,158,448	-		Psyr_1888	0.44	+0.8
2,158,458	+		Psyr_1888	0.45	+0.7
2,158,476	+		Psyr_1888	0.48	-0.0
2,158,491	+		Psyr_1888	0.50	-0.6
2,158,492	-		Psyr_1888	0.50	-0.4
2,158,631	-		Psyr_1888	0.68	+1.0
2,158,764	+		Psyr_1888	0.85	+0.6
2,158,765	-		Psyr_1888	0.85	+2.4
2,158,765	-		Psyr_1888	0.85	+0.9
2,158,810	-				-1.5
2,158,886	+				-0.3
2,158,886	+				+0.8
2,158,887	-				+0.7
2,158,887	-				+0.9
2,158,887	-				-1.8
2,158,887	-				+0.7
2,158,887	-				+0.3
2,158,924	-				+0.3
2,158,928	-				+0.6
2,158,932	+				+0.0
2,158,932	+				-0.6
2,158,932	+				-0.2
2,158,933	-				-0.8
2,158,933	-				+0.4
2,158,933	-				-0.2
2,158,958	-				+0.3
2,158,958	-				+0.2
2,158,958	-				-1.6
2,158,958	-				-0.6
2,159,019	-		Psyr_1889	0.12	+1.0
2,159,026	+				+0.8
2,159,027	-		Psyr_1889	0.13	-0.8
2,159,032	+		Psyr_1889	0.14	+0.1
2,159,036	+		Psyr_1889	0.14	+1.0
2,159,037	-		Psyr_1889	0.15	+0.8
2,159,037	-		Psyr_1889	0.15	+1.2
2,159,040	+		Psyr_1889	0.15	+0.4
2,159,040	+		Psyr_1889	0.15	-0.8
2,159,089	+		Psyr_1889	0.23	+0.1
2,159,145	+		Psyr_1889	0.31	-2.1
2,159,145	+				+0.4
2,159,145	+		Psyr_1889	0.31	+2.1
2,159,145	+		Psyr_1889	0.31	-1.3
2,159,146	-		Psyr_1889	0.31	-0.4
2,159,217	+		Psyr_1889	0.42	+0.6
2,159,218	-		Psyr_1889	0.42	-0.2
2,159,218	-		Psyr_1889	0.42	+1.0
2,159,218	-		Psyr_1889	0.42	+1.0
2,159,218	-		Psyr_1889	0.42	-0.9
2,159,223	+		Psyr_1889	0.43	-1.5
2,159,223	+		Psyr_1889	0.43	+1.0
2,159,223	+		Psyr_1889	0.43	-0.2
2,159,224	-		Psyr_1889	0.43	-0.2
2,159,383	+		Psyr_1889	0.67	-2.0
2,159,384	-		Psyr_1889	0.67	-0.8
2,159,411	+		Psyr_1889	0.72	-0.4
2,159,566	+				-0.0
2,159,566	+				-2.1
2,159,566	+				-0.8
2,159,566	+				-0.8
2,159,566	+				-1.7
2,159,566	+				+0.1
2,159,566	+				-0.3
2,159,566	+				-0.2
2,159,566	+				-1.2
2,159,566	+				+2.2
2,159,566	+				+0.7
2,159,567	-				-1.8
2,159,567	-				-0.7
2,159,567	-				-0.6
2,159,567	-				+0.1
2,159,567	-				-0.6
2,159,567	-				+4.3
2,159,567	-				+1.8
2,159,567	-				-1.6
2,159,607	-				+0.6
2,159,623	+				-0.8
2,159,623	+				-2.0
2,159,624	-				+0.8
2,159,626	-				+0.4
2,159,712	-				+0.3
2,159,712	-				-0.0
2,159,738	+				+0.4
2,159,738	+				+0.5
2,159,738	+				-2.2
2,159,738	+				-1.2
2,159,738	+				-0.7
2,159,738	+				+0.0
2,159,738	+				+0.3
2,159,738	+				+0.8
2,159,738	+				-0.0
2,159,739	-				+0.8
2,159,739	-				-0.0
2,159,739	-				-0.9
2,159,739	-				-0.4
2,159,739	-				+0.4
2,159,739	-				+2.7
2,159,739	-				+0.2
2,159,739	-				-0.8
2,159,739	-				-1.6
2,159,739	-				-0.2
2,159,744	+				-1.1
2,159,744	+				-0.3
2,159,744	+				-0.4
2,159,744	+				-2.8
2,159,744	+				+0.3
2,159,745	-				-1.1
2,159,745	-				+0.4
2,159,745	-				-0.2
2,159,751	+				+0.3
2,159,752	-				+0.1
2,159,752	-				-0.1
2,159,752	-				-1.0
2,159,755	+				+1.1
2,159,755	+				-0.2
2,159,755	+				+0.8
2,159,755	+				-0.3
2,159,755	+				-0.3
2,159,755	+				-0.5
2,159,756	-				-0.4
2,159,756	-				-0.2
2,159,756	-				+1.0
2,159,799	+				-1.2
2,159,800	-				+0.8
2,159,800	-				+1.1
2,159,812	+				-0.9
2,159,812	+				-2.1
2,159,812	+				-0.9
2,159,813	-				-2.1
2,159,813	-				-1.0
2,159,813	-				-0.0
2,159,813	-				-0.2
2,159,813	-				-0.9
2,159,813	-				-0.8
2,159,813	-				-0.4
2,159,853	+				-0.5
2,159,853	+				+0.2
2,159,854	-				-1.6
2,159,854	-				-0.3