Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0691

Experiment: KB with Helenine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0690 and Psyr_0691 are separated by 204 nucleotidesPsyr_0691 and Psyr_0692 are separated by 67 nucleotidesPsyr_0692 and Psyr_0693 overlap by 4 nucleotides Psyr_0690: Psyr_0690 - 3-hydroxyisobutyrate dehydrogenase, at 794,145 to 795,032 _0690 Psyr_0691: Psyr_0691 - gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03, at 795,237 to 796,964 _0691 Psyr_0692: Psyr_0692 - Binding-protein-dependent transport systems inner membrane component, at 797,032 to 797,799 _0692 Psyr_0693: Psyr_0693 - Binding-protein-dependent transport systems inner membrane component, at 797,796 to 798,623 _0693 Position (kb) 795 796 797Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 794.365 kb on - strand, within Psyr_0690at 794.762 kb on + strand, within Psyr_0690at 794.763 kb on - strand, within Psyr_0690at 794.763 kb on - strand, within Psyr_0690at 794.796 kb on + strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.955 kb on + strandat 794.956 kb on - strandat 795.030 kb on + strandat 795.030 kb on + strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.291 kb on + strandat 795.292 kb on - strandat 795.388 kb on + strandat 795.388 kb on + strandat 795.388 kb on + strandat 795.388 kb on + strandat 795.388 kb on + strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.405 kb on - strandat 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.675 kb on + strand, within Psyr_0691at 795.676 kb on - strand, within Psyr_0691at 795.676 kb on - strand, within Psyr_0691at 795.676 kb on - strand, within Psyr_0691at 795.676 kb on - strand, within Psyr_0691at 795.739 kb on + strand, within Psyr_0691at 795.739 kb on + strand, within Psyr_0691at 795.739 kb on + strand, within Psyr_0691at 795.740 kb on - strand, within Psyr_0691at 795.761 kb on + strand, within Psyr_0691at 795.761 kb on + strand, within Psyr_0691at 795.921 kb on + strand, within Psyr_0691at 795.922 kb on - strand, within Psyr_0691at 795.922 kb on - strand, within Psyr_0691at 795.922 kb on - strand, within Psyr_0691at 796.002 kb on + strand, within Psyr_0691at 796.002 kb on + strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691at 796.160 kb on + strand, within Psyr_0691at 796.160 kb on + strand, within Psyr_0691at 796.167 kb on + strand, within Psyr_0691at 796.168 kb on - strand, within Psyr_0691at 796.194 kb on + strand, within Psyr_0691at 796.194 kb on + strand, within Psyr_0691at 796.213 kb on - strand, within Psyr_0691at 796.213 kb on - strand, within Psyr_0691at 796.269 kb on + strand, within Psyr_0691at 796.269 kb on + strand, within Psyr_0691at 796.269 kb on + strand, within Psyr_0691at 796.269 kb on + strand, within Psyr_0691at 796.269 kb on + strand, within Psyr_0691at 796.270 kb on - strand, within Psyr_0691at 796.270 kb on - strand, within Psyr_0691at 796.270 kb on - strand, within Psyr_0691at 796.270 kb on - strand, within Psyr_0691at 796.270 kb on - strand, within Psyr_0691at 796.270 kb on - strand, within Psyr_0691at 796.361 kb on + strand, within Psyr_0691at 796.361 kb on + strand, within Psyr_0691at 796.362 kb on - strand, within Psyr_0691at 796.413 kb on + strand, within Psyr_0691at 796.413 kb on + strand, within Psyr_0691at 796.413 kb on + strand, within Psyr_0691at 796.413 kb on + strand, within Psyr_0691at 796.413 kb on + strand, within Psyr_0691at 796.413 kb on + strand, within Psyr_0691at 796.414 kb on - strand, within Psyr_0691at 796.521 kb on + strand, within Psyr_0691at 796.521 kb on + strand, within Psyr_0691at 796.521 kb on + strand, within Psyr_0691at 796.521 kb on + strand, within Psyr_0691at 796.522 kb on - strand, within Psyr_0691at 796.522 kb on - strand, within Psyr_0691at 796.522 kb on - strand, within Psyr_0691at 796.522 kb on - strand, within Psyr_0691at 796.693 kb on - strand, within Psyr_0691at 796.770 kb on - strand, within Psyr_0691at 796.915 kb on - strandat 796.915 kb on - strandat 797.037 kb on + strandat 797.038 kb on - strandat 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.235 kb on + strand, within Psyr_0692at 797.235 kb on + strand, within Psyr_0692at 797.235 kb on + strand, within Psyr_0692at 797.236 kb on - strand, within Psyr_0692at 797.236 kb on - strand, within Psyr_0692at 797.236 kb on - strand, within Psyr_0692at 797.238 kb on - strand, within Psyr_0692at 797.238 kb on - strand, within Psyr_0692at 797.238 kb on - strand, within Psyr_0692at 797.277 kb on - strand, within Psyr_0692at 797.277 kb on - strand, within Psyr_0692at 797.733 kb on - strandat 797.733 kb on - strandat 797.733 kb on - strandat 797.733 kb on - strandat 797.733 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Helenine 10 mM
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794,365 - Psyr_0690 0.25 -0.1
794,762 + Psyr_0690 0.69 +1.8
794,763 - Psyr_0690 0.70 +0.5
794,763 - Psyr_0690 0.70 -0.8
794,796 + Psyr_0690 0.73 +0.7
794,797 - Psyr_0690 0.73 +1.7
794,797 - Psyr_0690 0.73 -0.5
794,797 - Psyr_0690 0.73 -0.5
794,797 - Psyr_0690 0.73 -0.6
794,797 - Psyr_0690 0.73 +1.3
794,797 - Psyr_0690 0.73 +0.7
794,955 + -0.3
794,956 - +1.2
795,030 + -0.6
795,030 + +0.8
795,031 - +0.5
795,031 - +0.1
795,031 - +0.6
795,031 - +0.7
795,031 - +2.5
795,031 - -0.4
795,291 + +0.2
795,292 - -1.1
795,388 + -1.3
795,388 + -1.3
795,388 + -1.3
795,388 + -1.1
795,388 + +0.3
795,389 - +0.5
795,389 - -0.9
795,389 - -0.1
795,389 - +1.8
795,389 - +0.7
795,389 - -1.3
795,405 - -0.5
795,570 + Psyr_0691 0.19 -2.4
795,570 + Psyr_0691 0.19 +0.7
795,570 + Psyr_0691 0.19 +0.3
795,570 + Psyr_0691 0.19 +1.2
795,570 + Psyr_0691 0.19 -0.1
795,570 + Psyr_0691 0.19 -0.5
795,570 + Psyr_0691 0.19 -0.4
795,570 + Psyr_0691 0.19 +0.3
795,570 + Psyr_0691 0.19 +2.1
795,570 + Psyr_0691 0.19 +0.7
795,570 + Psyr_0691 0.19 +1.9
795,571 - Psyr_0691 0.19 +2.5
795,571 - Psyr_0691 0.19 -0.3
795,571 - Psyr_0691 0.19 -0.3
795,571 - Psyr_0691 0.19 -0.1
795,571 - Psyr_0691 0.19 -0.6
795,571 - Psyr_0691 0.19 -0.2
795,571 - Psyr_0691 0.19 -0.9
795,675 + Psyr_0691 0.25 -0.2
795,676 - Psyr_0691 0.25 -0.9
795,676 - Psyr_0691 0.25 -2.1
795,676 - Psyr_0691 0.25 +0.5
795,676 - Psyr_0691 0.25 +0.1
795,739 + Psyr_0691 0.29 -0.0
795,739 + Psyr_0691 0.29 -0.4
795,739 + Psyr_0691 0.29 +1.9
795,740 - Psyr_0691 0.29 +0.6
795,761 + Psyr_0691 0.30 +0.6
795,761 + Psyr_0691 0.30 -1.1
795,921 + Psyr_0691 0.40 +1.7
795,922 - Psyr_0691 0.40 +0.5
795,922 - Psyr_0691 0.40 -1.7
795,922 - Psyr_0691 0.40 +0.9
796,002 + Psyr_0691 0.44 +1.7
796,002 + Psyr_0691 0.44 +1.1
796,003 - Psyr_0691 0.44 -0.1
796,003 - Psyr_0691 0.44 -0.0
796,003 - Psyr_0691 0.44 -0.9
796,003 - Psyr_0691 0.44 -1.4
796,003 - Psyr_0691 0.44 -0.2
796,160 + Psyr_0691 0.53 +1.1
796,160 + Psyr_0691 0.53 +0.9
796,167 + Psyr_0691 0.54 +0.4
796,168 - Psyr_0691 0.54 +0.7
796,194 + Psyr_0691 0.55 -0.8
796,194 + Psyr_0691 0.55 +0.7
796,213 - Psyr_0691 0.56 +0.1
796,213 - Psyr_0691 0.56 -1.2
796,269 + Psyr_0691 0.60 -0.9
796,269 + Psyr_0691 0.60 +1.9
796,269 + Psyr_0691 0.60 +0.7
796,269 + Psyr_0691 0.60 -0.8
796,269 + Psyr_0691 0.60 -0.4
796,270 - Psyr_0691 0.60 +0.2
796,270 - Psyr_0691 0.60 -0.1
796,270 - Psyr_0691 0.60 +0.4
796,270 - Psyr_0691 0.60 +0.9
796,270 - Psyr_0691 0.60 +0.5
796,270 - Psyr_0691 0.60 +2.4
796,361 + Psyr_0691 0.65 +0.1
796,361 + Psyr_0691 0.65 -0.4
796,362 - Psyr_0691 0.65 +0.2
796,413 + Psyr_0691 0.68 +1.4
796,413 + Psyr_0691 0.68 -0.2
796,413 + Psyr_0691 0.68 -0.3
796,413 + Psyr_0691 0.68 +0.8
796,413 + Psyr_0691 0.68 -0.0
796,413 + Psyr_0691 0.68 -0.0
796,414 - Psyr_0691 0.68 +0.6
796,521 + Psyr_0691 0.74 -0.3
796,521 + Psyr_0691 0.74 -0.0
796,521 + Psyr_0691 0.74 -1.4
796,521 + Psyr_0691 0.74 +0.2
796,522 - Psyr_0691 0.74 -1.4
796,522 - Psyr_0691 0.74 +0.4
796,522 - Psyr_0691 0.74 +0.5
796,522 - Psyr_0691 0.74 +1.1
796,693 - Psyr_0691 0.84 +0.2
796,770 - Psyr_0691 0.89 -1.0
796,915 - +0.7
796,915 - -1.3
797,037 + -1.0
797,038 - +0.2
797,153 + Psyr_0692 0.16 -2.1
797,153 + Psyr_0692 0.16 +0.1
797,153 + Psyr_0692 0.16 +0.5
797,153 + Psyr_0692 0.16 -1.1
797,153 + Psyr_0692 0.16 -1.4
797,153 + Psyr_0692 0.16 -0.3
797,153 + Psyr_0692 0.16 -0.7
797,153 + Psyr_0692 0.16 -1.5
797,153 + Psyr_0692 0.16 +0.8
797,153 + Psyr_0692 0.16 +0.5
797,153 + Psyr_0692 0.16 +0.8
797,153 + Psyr_0692 0.16 +0.0
797,154 - Psyr_0692 0.16 +1.5
797,154 - Psyr_0692 0.16 -0.0
797,154 - Psyr_0692 0.16 -1.3
797,154 - Psyr_0692 0.16 -4.0
797,154 - Psyr_0692 0.16 +1.0
797,154 - Psyr_0692 0.16 -3.4
797,154 - Psyr_0692 0.16 +1.4
797,154 - Psyr_0692 0.16 +0.5
797,154 - Psyr_0692 0.16 +0.8
797,154 - Psyr_0692 0.16 -1.0
797,154 - Psyr_0692 0.16 -0.3
797,235 + Psyr_0692 0.26 -0.0
797,235 + Psyr_0692 0.26 +0.7
797,235 + Psyr_0692 0.26 +1.3
797,236 - Psyr_0692 0.27 -0.6
797,236 - Psyr_0692 0.27 +0.7
797,236 - Psyr_0692 0.27 +1.0
797,238 - Psyr_0692 0.27 -0.2
797,238 - Psyr_0692 0.27 +0.2
797,238 - Psyr_0692 0.27 +0.3
797,277 - Psyr_0692 0.32 -1.0
797,277 - Psyr_0692 0.32 +0.5
797,733 - +0.3
797,733 - -1.5
797,733 - -1.1
797,733 - +0.9
797,733 - -0.2

Or see this region's nucleotide sequence