Experiment: H2 McCas with 40 minute oxygen exposure
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04585 and MMP_RS04590 are separated by 27 nucleotides MMP_RS04590 and MMP_RS04595 are separated by 30 nucleotides MMP_RS04595 and MMP_RS04600 are separated by 109 nucleotides
MMP_RS04585: MMP_RS04585 - AIR synthase related protein, at 875,462 to 876,343
_RS04585
MMP_RS04590: MMP_RS04590 - hypothetical protein, at 876,371 to 877,336
_RS04590
MMP_RS04595: MMP_RS04595 - hypothetical protein, at 877,367 to 877,864
_RS04595
MMP_RS04600: MMP_RS04600 - tetratricopeptide repeat protein, at 877,974 to 879,140
_RS04600
Position (kb) 876
877
878 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 875.382 kb on - strand at 875.383 kb on + strand at 875.388 kb on - strand at 875.388 kb on - strand at 875.389 kb on + strand at 875.391 kb on + strand at 875.391 kb on + strand at 875.394 kb on - strand at 875.395 kb on + strand at 875.411 kb on + strand at 875.425 kb on - strand at 875.426 kb on + strand at 875.426 kb on + strand at 875.428 kb on + strand at 875.444 kb on + strand at 875.489 kb on - strand at 875.490 kb on + strand at 875.503 kb on - strand at 875.503 kb on - strand at 875.516 kb on + strand at 875.598 kb on - strand, within MMP_RS04585 at 875.621 kb on + strand, within MMP_RS04585 at 875.668 kb on - strand, within MMP_RS04585 at 875.678 kb on + strand, within MMP_RS04585 at 875.678 kb on + strand, within MMP_RS04585 at 875.766 kb on - strand, within MMP_RS04585 at 875.767 kb on + strand, within MMP_RS04585 at 875.767 kb on + strand, within MMP_RS04585 at 875.797 kb on - strand, within MMP_RS04585 at 875.797 kb on - strand, within MMP_RS04585 at 875.798 kb on + strand, within MMP_RS04585 at 875.809 kb on + strand, within MMP_RS04585 at 875.811 kb on - strand, within MMP_RS04585 at 875.892 kb on - strand, within MMP_RS04585 at 875.893 kb on + strand, within MMP_RS04585 at 875.925 kb on - strand, within MMP_RS04585 at 875.926 kb on + strand, within MMP_RS04585 at 875.926 kb on + strand, within MMP_RS04585 at 875.926 kb on + strand, within MMP_RS04585 at 875.926 kb on + strand, within MMP_RS04585 at 875.949 kb on - strand, within MMP_RS04585 at 875.959 kb on - strand, within MMP_RS04585 at 876.007 kb on + strand, within MMP_RS04585 at 876.007 kb on + strand, within MMP_RS04585 at 876.166 kb on + strand, within MMP_RS04585 at 876.166 kb on + strand, within MMP_RS04585 at 876.196 kb on - strand, within MMP_RS04585 at 876.196 kb on - strand, within MMP_RS04585 at 876.220 kb on - strand, within MMP_RS04585 at 876.220 kb on - strand, within MMP_RS04585 at 876.220 kb on - strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.250 kb on + strand, within MMP_RS04585 at 876.267 kb on - strand at 876.289 kb on - strand at 876.289 kb on - strand at 876.295 kb on - strand at 876.315 kb on - strand at 876.316 kb on + strand at 876.316 kb on + strand at 876.335 kb on + strand at 876.366 kb on + strand at 876.407 kb on + strand at 876.501 kb on - strand, within MMP_RS04590 at 876.501 kb on - strand, within MMP_RS04590 at 876.502 kb on + strand, within MMP_RS04590 at 876.506 kb on - strand, within MMP_RS04590 at 876.507 kb on + strand, within MMP_RS04590 at 876.507 kb on + strand, within MMP_RS04590 at 876.516 kb on - strand, within MMP_RS04590 at 876.527 kb on - strand, within MMP_RS04590 at 876.528 kb on + strand, within MMP_RS04590 at 876.542 kb on + strand, within MMP_RS04590 at 876.546 kb on + strand, within MMP_RS04590 at 876.560 kb on - strand, within MMP_RS04590 at 876.560 kb on - strand, within MMP_RS04590 at 876.607 kb on - strand, within MMP_RS04590 at 876.608 kb on + strand, within MMP_RS04590 at 876.632 kb on + strand, within MMP_RS04590 at 876.659 kb on - strand, within MMP_RS04590 at 876.687 kb on + strand, within MMP_RS04590 at 876.691 kb on - strand, within MMP_RS04590 at 876.955 kb on + strand, within MMP_RS04590 at 876.998 kb on - strand, within MMP_RS04590 at 877.043 kb on - strand, within MMP_RS04590 at 877.120 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.138 kb on - strand, within MMP_RS04590 at 877.170 kb on - strand, within MMP_RS04590 at 877.174 kb on - strand, within MMP_RS04590 at 877.209 kb on + strand, within MMP_RS04590 at 877.233 kb on + strand, within MMP_RS04590 at 877.272 kb on + strand at 877.363 kb on - strand at 877.482 kb on + strand, within MMP_RS04595 at 877.539 kb on - strand, within MMP_RS04595 at 877.550 kb on - strand, within MMP_RS04595 at 877.560 kb on + strand, within MMP_RS04595 at 877.571 kb on - strand, within MMP_RS04595 at 877.743 kb on + strand, within MMP_RS04595 at 877.766 kb on + strand, within MMP_RS04595 at 877.846 kb on + strand at 877.846 kb on + strand at 877.895 kb on - strand at 877.910 kb on - strand at 877.915 kb on - strand at 877.957 kb on - strand at 877.960 kb on - strand at 877.994 kb on - strand at 877.995 kb on + strand at 877.995 kb on + strand at 877.997 kb on - strand at 878.013 kb on - strand at 878.013 kb on - strand at 878.013 kb on - strand at 878.027 kb on + strand at 878.066 kb on + strand at 878.067 kb on - strand at 878.118 kb on + strand, within MMP_RS04600 at 878.118 kb on + strand, within MMP_RS04600 at 878.137 kb on + strand, within MMP_RS04600 at 878.137 kb on + strand, within MMP_RS04600 at 878.169 kb on - strand, within MMP_RS04600 at 878.169 kb on - strand, within MMP_RS04600 at 878.171 kb on - strand, within MMP_RS04600 at 878.171 kb on - strand, within MMP_RS04600 at 878.172 kb on + strand, within MMP_RS04600 at 878.173 kb on - strand, within MMP_RS04600 at 878.182 kb on - strand, within MMP_RS04600
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas with 40 minute oxygen exposure remove 875,382 - -1.7 875,383 + -0.0 875,388 - -0.1 875,388 - -0.1 875,389 + +0.8 875,391 + +0.0 875,391 + -0.0 875,394 - +0.2 875,395 + -0.1 875,411 + +0.4 875,425 - -2.1 875,426 + +0.4 875,426 + -0.2 875,428 + -0.3 875,444 + +0.1 875,489 - -2.1 875,490 + -1.2 875,503 - -1.1 875,503 - -4.5 875,516 + -2.2 875,598 - MMP_RS04585 0.15 -2.2 875,621 + MMP_RS04585 0.18 -3.1 875,668 - MMP_RS04585 0.23 -1.8 875,678 + MMP_RS04585 0.24 -2.5 875,678 + MMP_RS04585 0.24 -1.1 875,766 - MMP_RS04585 0.34 -2.7 875,767 + MMP_RS04585 0.35 -4.1 875,767 + MMP_RS04585 0.35 -3.5 875,797 - MMP_RS04585 0.38 -4.7 875,797 - MMP_RS04585 0.38 -4.3 875,798 + MMP_RS04585 0.38 -3.3 875,809 + MMP_RS04585 0.39 -2.4 875,811 - MMP_RS04585 0.40 -1.5 875,892 - MMP_RS04585 0.49 -2.8 875,893 + MMP_RS04585 0.49 -5.7 875,925 - MMP_RS04585 0.52 -4.6 875,926 + MMP_RS04585 0.53 -2.9 875,926 + MMP_RS04585 0.53 -2.1 875,926 + MMP_RS04585 0.53 -0.2 875,926 + MMP_RS04585 0.53 -3.3 875,949 - MMP_RS04585 0.55 -2.3 875,959 - MMP_RS04585 0.56 -4.3 876,007 + MMP_RS04585 0.62 -2.9 876,007 + MMP_RS04585 0.62 -2.9 876,166 + MMP_RS04585 0.80 -2.7 876,166 + MMP_RS04585 0.80 -3.6 876,196 - MMP_RS04585 0.83 -2.0 876,196 - MMP_RS04585 0.83 -2.2 876,220 - MMP_RS04585 0.86 -3.2 876,220 - MMP_RS04585 0.86 -2.7 876,220 - MMP_RS04585 0.86 -2.8 876,221 + MMP_RS04585 0.86 -2.3 876,221 + MMP_RS04585 0.86 -5.1 876,221 + MMP_RS04585 0.86 -2.7 876,221 + MMP_RS04585 0.86 -2.6 876,221 + MMP_RS04585 0.86 -3.0 876,250 + MMP_RS04585 0.89 -2.9 876,267 - -2.4 876,289 - -2.1 876,289 - -3.0 876,295 - -2.7 876,315 - -0.8 876,316 + +0.0 876,316 + -0.0 876,335 + +0.6 876,366 + -2.5 876,407 + -0.1 876,501 - MMP_RS04590 0.13 -0.5 876,501 - MMP_RS04590 0.13 -0.6 876,502 + MMP_RS04590 0.14 -2.2 876,506 - MMP_RS04590 0.14 -0.7 876,507 + MMP_RS04590 0.14 -0.4 876,507 + MMP_RS04590 0.14 +0.6 876,516 - MMP_RS04590 0.15 -0.4 876,527 - MMP_RS04590 0.16 -0.8 876,528 + MMP_RS04590 0.16 -1.8 876,542 + MMP_RS04590 0.18 -1.2 876,546 + MMP_RS04590 0.18 -1.0 876,560 - MMP_RS04590 0.20 -0.4 876,560 - MMP_RS04590 0.20 -0.7 876,607 - MMP_RS04590 0.24 -0.6 876,608 + MMP_RS04590 0.25 -0.3 876,632 + MMP_RS04590 0.27 +0.3 876,659 - MMP_RS04590 0.30 -1.5 876,687 + MMP_RS04590 0.33 +0.6 876,691 - MMP_RS04590 0.33 +0.3 876,955 + MMP_RS04590 0.60 -0.4 876,998 - MMP_RS04590 0.65 -1.0 877,043 - MMP_RS04590 0.70 -0.2 877,120 + MMP_RS04590 0.78 -0.5 877,133 + MMP_RS04590 0.79 -0.4 877,133 + MMP_RS04590 0.79 -0.2 877,133 + MMP_RS04590 0.79 -0.4 877,138 - MMP_RS04590 0.79 -1.8 877,170 - MMP_RS04590 0.83 -0.7 877,174 - MMP_RS04590 0.83 -1.3 877,209 + MMP_RS04590 0.87 +0.0 877,233 + MMP_RS04590 0.89 -1.6 877,272 + -1.2 877,363 - -1.1 877,482 + MMP_RS04595 0.23 -1.0 877,539 - MMP_RS04595 0.35 -0.9 877,550 - MMP_RS04595 0.37 -1.4 877,560 + MMP_RS04595 0.39 -0.8 877,571 - MMP_RS04595 0.41 +0.0 877,743 + MMP_RS04595 0.76 -0.8 877,766 + MMP_RS04595 0.80 -1.0 877,846 + -0.8 877,846 + -0.6 877,895 - -1.6 877,910 - -0.2 877,915 - -0.5 877,957 - +0.1 877,960 - +0.4 877,994 - +0.5 877,995 + -0.3 877,995 + +0.9 877,997 - +0.2 878,013 - -0.6 878,013 - -0.4 878,013 - -0.1 878,027 + -0.3 878,066 + +0.0 878,067 - -0.6 878,118 + MMP_RS04600 0.12 -0.1 878,118 + MMP_RS04600 0.12 -0.4 878,137 + MMP_RS04600 0.14 -0.8 878,137 + MMP_RS04600 0.14 -0.7 878,169 - MMP_RS04600 0.17 -1.5 878,169 - MMP_RS04600 0.17 -0.6 878,171 - MMP_RS04600 0.17 -0.0 878,171 - MMP_RS04600 0.17 -0.4 878,172 + MMP_RS04600 0.17 -0.7 878,173 - MMP_RS04600 0.17 -0.6 878,182 - MMP_RS04600 0.18 -0.3
Or see this region's nucleotide sequence