Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06140

Experiment: Bu1_10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06139 and H281DRAFT_06140 are separated by 265 nucleotidesH281DRAFT_06140 and H281DRAFT_06141 are separated by 665 nucleotides H281DRAFT_06139: H281DRAFT_06139 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 30,517 to 31,473 _06139 H281DRAFT_06140: H281DRAFT_06140 - LysR substrate binding domain-containing protein, at 31,739 to 31,948 _06140 H281DRAFT_06141: H281DRAFT_06141 - hypothetical protein, at 32,614 to 32,907 _06141 Position (kb) 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 30.822 kb on + strand, within H281DRAFT_06139at 30.822 kb on + strand, within H281DRAFT_06139at 30.822 kb on + strand, within H281DRAFT_06139at 30.827 kb on - strand, within H281DRAFT_06139at 30.827 kb on - strand, within H281DRAFT_06139at 30.903 kb on + strand, within H281DRAFT_06139at 31.046 kb on + strand, within H281DRAFT_06139at 31.046 kb on + strand, within H281DRAFT_06139at 31.046 kb on + strand, within H281DRAFT_06139at 31.046 kb on + strand, within H281DRAFT_06139at 31.046 kb on + strand, within H281DRAFT_06139at 31.046 kb on + strand, within H281DRAFT_06139at 31.047 kb on - strand, within H281DRAFT_06139at 31.047 kb on - strand, within H281DRAFT_06139at 31.047 kb on - strand, within H281DRAFT_06139at 31.047 kb on - strand, within H281DRAFT_06139at 31.070 kb on - strand, within H281DRAFT_06139at 31.139 kb on + strand, within H281DRAFT_06139at 31.139 kb on + strand, within H281DRAFT_06139at 31.174 kb on - strand, within H281DRAFT_06139at 31.210 kb on + strand, within H281DRAFT_06139at 31.215 kb on - strand, within H281DRAFT_06139at 31.215 kb on - strand, within H281DRAFT_06139at 31.215 kb on - strand, within H281DRAFT_06139at 31.215 kb on - strandat 31.215 kb on - strand, within H281DRAFT_06139at 31.215 kb on - strand, within H281DRAFT_06139at 31.215 kb on - strand, within H281DRAFT_06139at 31.232 kb on - strand, within H281DRAFT_06139at 31.232 kb on - strand, within H281DRAFT_06139at 31.262 kb on - strand, within H281DRAFT_06139at 31.277 kb on + strand, within H281DRAFT_06139at 31.277 kb on + strand, within H281DRAFT_06139at 31.277 kb on + strand, within H281DRAFT_06139at 31.278 kb on - strand, within H281DRAFT_06139at 31.278 kb on - strand, within H281DRAFT_06139at 31.278 kb on - strand, within H281DRAFT_06139at 31.278 kb on - strand, within H281DRAFT_06139at 31.291 kb on + strand, within H281DRAFT_06139at 31.292 kb on - strand, within H281DRAFT_06139at 31.399 kb on - strandat 31.399 kb on - strandat 31.493 kb on - strandat 31.511 kb on + strandat 31.512 kb on - strandat 31.689 kb on + strandat 31.695 kb on + strandat 31.846 kb on + strand, within H281DRAFT_06140at 31.846 kb on + strand, within H281DRAFT_06140at 31.847 kb on - strand, within H281DRAFT_06140at 31.847 kb on - strand, within H281DRAFT_06140at 31.853 kb on + strand, within H281DRAFT_06140at 31.853 kb on + strand, within H281DRAFT_06140at 31.889 kb on + strand, within H281DRAFT_06140at 31.890 kb on - strand, within H281DRAFT_06140at 31.890 kb on - strand, within H281DRAFT_06140at 31.890 kb on - strand, within H281DRAFT_06140at 31.924 kb on - strand, within H281DRAFT_06140at 31.975 kb on - strandat 32.012 kb on + strandat 32.041 kb on + strandat 32.083 kb on + strandat 32.083 kb on + strandat 32.131 kb on + strandat 32.200 kb on - strandat 32.254 kb on - strandat 32.254 kb on - strandat 32.257 kb on - strandat 32.325 kb on - strandat 32.333 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.373 kb on - strandat 32.373 kb on - strandat 32.373 kb on - strandat 32.373 kb on - strandat 32.421 kb on + strandat 32.458 kb on + strandat 32.459 kb on - strandat 32.498 kb on + strandat 32.531 kb on - strandat 32.579 kb on + strandat 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.712 kb on - strand, within H281DRAFT_06141at 32.712 kb on - strand, within H281DRAFT_06141at 32.846 kb on + strand, within H281DRAFT_06141at 32.847 kb on - strand, within H281DRAFT_06141at 32.847 kb on - strand, within H281DRAFT_06141at 32.942 kb on + strandat 32.942 kb on + strandat 32.943 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
remove
30,822 + H281DRAFT_06139 0.32 +0.3
30,822 + H281DRAFT_06139 0.32 +0.4
30,822 + H281DRAFT_06139 0.32 +0.0
30,827 - H281DRAFT_06139 0.32 -0.3
30,827 - H281DRAFT_06139 0.32 -2.7
30,903 + H281DRAFT_06139 0.40 +0.2
31,046 + H281DRAFT_06139 0.55 +0.6
31,046 + H281DRAFT_06139 0.55 +0.4
31,046 + H281DRAFT_06139 0.55 -1.2
31,046 + H281DRAFT_06139 0.55 +0.0
31,046 + H281DRAFT_06139 0.55 -1.2
31,046 + H281DRAFT_06139 0.55 +0.1
31,047 - H281DRAFT_06139 0.55 +0.8
31,047 - H281DRAFT_06139 0.55 +0.2
31,047 - H281DRAFT_06139 0.55 -0.1
31,047 - H281DRAFT_06139 0.55 -0.9
31,070 - H281DRAFT_06139 0.58 +0.4
31,139 + H281DRAFT_06139 0.65 -0.1
31,139 + H281DRAFT_06139 0.65 -0.2
31,174 - H281DRAFT_06139 0.69 -0.1
31,210 + H281DRAFT_06139 0.72 -0.3
31,215 - H281DRAFT_06139 0.73 +0.9
31,215 - H281DRAFT_06139 0.73 +0.7
31,215 - H281DRAFT_06139 0.73 +0.7
31,215 - +1.2
31,215 - H281DRAFT_06139 0.73 +0.7
31,215 - H281DRAFT_06139 0.73 +0.5
31,215 - H281DRAFT_06139 0.73 -0.5
31,232 - H281DRAFT_06139 0.75 +1.3
31,232 - H281DRAFT_06139 0.75 -0.0
31,262 - H281DRAFT_06139 0.78 -1.7
31,277 + H281DRAFT_06139 0.79 +0.3
31,277 + H281DRAFT_06139 0.79 +0.9
31,277 + H281DRAFT_06139 0.79 +0.1
31,278 - H281DRAFT_06139 0.80 +1.1
31,278 - H281DRAFT_06139 0.80 -2.2
31,278 - H281DRAFT_06139 0.80 +0.7
31,278 - H281DRAFT_06139 0.80 -2.6
31,291 + H281DRAFT_06139 0.81 -0.8
31,292 - H281DRAFT_06139 0.81 +0.5
31,399 - -0.7
31,399 - -1.0
31,493 - +0.5
31,511 + -1.4
31,512 - +0.1
31,689 + -0.7
31,695 + -0.9
31,846 + H281DRAFT_06140 0.51 +0.3
31,846 + H281DRAFT_06140 0.51 +0.9
31,847 - H281DRAFT_06140 0.51 +0.8
31,847 - H281DRAFT_06140 0.51 +0.4
31,853 + H281DRAFT_06140 0.54 -0.4
31,853 + H281DRAFT_06140 0.54 +0.5
31,889 + H281DRAFT_06140 0.71 -0.3
31,890 - H281DRAFT_06140 0.72 -0.1
31,890 - H281DRAFT_06140 0.72 -0.6
31,890 - H281DRAFT_06140 0.72 -0.2
31,924 - H281DRAFT_06140 0.88 -1.3
31,975 - +0.2
32,012 + +0.9
32,041 + -0.7
32,083 + +0.9
32,083 + +1.2
32,131 + -0.0
32,200 - +0.9
32,254 - -0.8
32,254 - +0.0
32,257 - +0.2
32,325 - +0.9
32,333 + -1.2
32,372 + +0.2
32,372 + -0.0
32,372 + -0.0
32,372 + -1.8
32,372 + +0.0
32,372 + -2.5
32,372 + +0.0
32,372 + +0.1
32,372 + +0.2
32,372 + -2.5
32,373 - -0.8
32,373 - +0.6
32,373 - -0.3
32,373 - -1.2
32,421 + +0.3
32,458 + +0.5
32,459 - -1.1
32,498 + -1.1
32,531 - -1.0
32,579 + -0.1
32,666 + H281DRAFT_06141 0.18 +0.3
32,666 + H281DRAFT_06141 0.18 +0.6
32,666 + H281DRAFT_06141 0.18 -0.3
32,666 + H281DRAFT_06141 0.18 +0.7
32,666 + H281DRAFT_06141 0.18 -0.7
32,666 + H281DRAFT_06141 0.18 +1.9
32,712 - H281DRAFT_06141 0.33 -0.5
32,712 - H281DRAFT_06141 0.33 +0.5
32,846 + H281DRAFT_06141 0.79 -2.7
32,847 - H281DRAFT_06141 0.79 -0.3
32,847 - H281DRAFT_06141 0.79 +0.8
32,942 + +0.3
32,942 + -0.5
32,943 - -2.0

Or see this region's nucleotide sequence