Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05833

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05831 and H281DRAFT_05832 are separated by 223 nucleotidesH281DRAFT_05832 and H281DRAFT_05833 are separated by 216 nucleotidesH281DRAFT_05833 and H281DRAFT_05834 are separated by 78 nucleotides H281DRAFT_05831: H281DRAFT_05831 - transcriptional regulator, IclR family, at 107,834 to 108,586 _05831 H281DRAFT_05832: H281DRAFT_05832 - hypothetical protein, at 108,810 to 109,022 _05832 H281DRAFT_05833: H281DRAFT_05833 - hypothetical protein, at 109,239 to 109,517 _05833 H281DRAFT_05834: H281DRAFT_05834 - hypothetical protein, at 109,596 to 110,402 _05834 Position (kb) 109 110Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 108.312 kb on - strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.395 kb on + strand, within H281DRAFT_05831at 108.404 kb on - strand, within H281DRAFT_05831at 108.579 kb on + strandat 108.579 kb on + strandat 108.580 kb on - strandat 108.584 kb on + strandat 108.584 kb on + strandat 108.595 kb on - strandat 108.595 kb on - strandat 108.663 kb on + strandat 108.663 kb on + strandat 108.663 kb on + strandat 108.664 kb on - strandat 108.667 kb on + strandat 108.667 kb on + strandat 108.667 kb on + strandat 108.668 kb on - strandat 108.668 kb on - strandat 108.668 kb on - strandat 108.695 kb on + strandat 108.696 kb on - strandat 108.705 kb on - strandat 108.705 kb on - strandat 108.705 kb on - strandat 108.707 kb on + strandat 108.707 kb on + strandat 108.708 kb on - strandat 108.708 kb on - strandat 108.765 kb on - strandat 108.765 kb on - strandat 109.020 kb on + strandat 109.021 kb on - strandat 109.021 kb on - strandat 109.021 kb on - strandat 109.021 kb on - strandat 109.210 kb on - strandat 109.517 kb on + strandat 109.517 kb on + strandat 109.517 kb on + strandat 109.538 kb on - strandat 109.538 kb on - strandat 109.538 kb on - strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.542 kb on - strandat 109.542 kb on - strandat 109.542 kb on - strandat 109.555 kb on - strandat 109.555 kb on - strandat 109.555 kb on - strandat 109.845 kb on + strand, within H281DRAFT_05834at 109.845 kb on + strand, within H281DRAFT_05834at 109.846 kb on - strand, within H281DRAFT_05834at 109.930 kb on + strand, within H281DRAFT_05834at 109.930 kb on + strand, within H281DRAFT_05834at 109.931 kb on - strand, within H281DRAFT_05834at 110.033 kb on - strand, within H281DRAFT_05834at 110.044 kb on + strand, within H281DRAFT_05834at 110.044 kb on + strand, within H281DRAFT_05834at 110.051 kb on + strand, within H281DRAFT_05834at 110.250 kb on + strand, within H281DRAFT_05834at 110.250 kb on + strand, within H281DRAFT_05834at 110.412 kb on - strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.504 kb on + strandat 110.505 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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108,312 - H281DRAFT_05831 0.63 -1.4
108,341 + H281DRAFT_05831 0.67 -0.3
108,341 + H281DRAFT_05831 0.67 -2.9
108,341 + H281DRAFT_05831 0.67 -2.6
108,341 + H281DRAFT_05831 0.67 +0.6
108,341 + H281DRAFT_05831 0.67 +1.6
108,342 - H281DRAFT_05831 0.67 +0.1
108,342 - H281DRAFT_05831 0.67 -0.6
108,342 - H281DRAFT_05831 0.67 -2.4
108,342 - H281DRAFT_05831 0.67 +0.7
108,395 + H281DRAFT_05831 0.75 +0.2
108,404 - H281DRAFT_05831 0.76 -1.2
108,579 + +0.5
108,579 + -0.4
108,580 - -0.7
108,584 + -1.3
108,584 + -1.7
108,595 - +0.6
108,595 - +0.8
108,663 + -0.7
108,663 + +0.6
108,663 + +0.0
108,664 - +0.4
108,667 + -3.1
108,667 + -0.5
108,667 + -1.0
108,668 - -0.7
108,668 - -0.7
108,668 - -0.4
108,695 + +1.8
108,696 - +0.1
108,705 - -0.2
108,705 - +0.5
108,705 - -1.5
108,707 + +0.1
108,707 + +0.1
108,708 - -0.6
108,708 - +0.9
108,765 - +2.2
108,765 - +0.4
109,020 + +0.7
109,021 - -0.6
109,021 - +0.3
109,021 - -0.6
109,021 - -0.7
109,210 - +0.5
109,517 + +1.3
109,517 + +0.4
109,517 + +0.0
109,538 - -0.3
109,538 - +0.6
109,538 - -0.7
109,541 + -0.4
109,541 + -0.4
109,541 + +0.2
109,541 + +0.3
109,541 + +0.1
109,541 + +1.5
109,542 - +0.3
109,542 - +0.6
109,542 - -0.2
109,555 - -1.2
109,555 - -0.4
109,555 - -1.3
109,845 + H281DRAFT_05834 0.31 +0.3
109,845 + H281DRAFT_05834 0.31 +0.4
109,846 - H281DRAFT_05834 0.31 +0.8
109,930 + H281DRAFT_05834 0.41 +0.9
109,930 + H281DRAFT_05834 0.41 +0.2
109,931 - H281DRAFT_05834 0.42 +0.1
110,033 - H281DRAFT_05834 0.54 -0.0
110,044 + H281DRAFT_05834 0.56 -0.2
110,044 + H281DRAFT_05834 0.56 +0.8
110,051 + H281DRAFT_05834 0.56 +0.6
110,250 + H281DRAFT_05834 0.81 -0.8
110,250 + H281DRAFT_05834 0.81 +1.9
110,412 - -0.3
110,484 + -1.3
110,484 + -0.6
110,484 + -1.0
110,484 + +0.3
110,484 + -0.1
110,484 + -0.1
110,484 + +1.2
110,484 + -0.8
110,484 + -1.9
110,484 + +0.5
110,484 + -0.7
110,485 - -2.5
110,485 - +0.6
110,485 - -1.8
110,485 - -1.1
110,485 - +1.7
110,485 - -0.3
110,485 - +0.7
110,485 - -3.2
110,485 - -1.2
110,485 - -0.6
110,485 - -0.1
110,485 - -1.6
110,485 - +0.5
110,485 - -0.6
110,504 + -0.6
110,505 - +1.3

Or see this region's nucleotide sequence