Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05831

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05830 and H281DRAFT_05831 are separated by 238 nucleotidesH281DRAFT_05831 and H281DRAFT_05832 are separated by 223 nucleotidesH281DRAFT_05832 and H281DRAFT_05833 are separated by 216 nucleotides H281DRAFT_05830: H281DRAFT_05830 - hypothetical protein, at 107,344 to 107,595 _05830 H281DRAFT_05831: H281DRAFT_05831 - transcriptional regulator, IclR family, at 107,834 to 108,586 _05831 H281DRAFT_05832: H281DRAFT_05832 - hypothetical protein, at 108,810 to 109,022 _05832 H281DRAFT_05833: H281DRAFT_05833 - hypothetical protein, at 109,239 to 109,517 _05833 Position (kb) 107 108 109Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 106.852 kb on + strandat 106.852 kb on + strandat 106.853 kb on - strandat 106.857 kb on + strandat 106.878 kb on - strandat 106.878 kb on - strandat 106.881 kb on + strandat 106.882 kb on - strandat 106.952 kb on - strandat 106.952 kb on - strandat 107.033 kb on + strandat 107.033 kb on + strandat 107.033 kb on + strandat 107.033 kb on + strandat 107.034 kb on - strandat 107.034 kb on - strandat 107.034 kb on - strandat 107.037 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.073 kb on + strandat 107.074 kb on - strandat 107.074 kb on - strandat 107.079 kb on + strandat 107.079 kb on + strandat 107.080 kb on - strandat 107.080 kb on - strandat 107.540 kb on + strand, within H281DRAFT_05830at 107.540 kb on + strand, within H281DRAFT_05830at 107.573 kb on - strandat 107.606 kb on - strandat 107.969 kb on + strand, within H281DRAFT_05831at 107.969 kb on + strand, within H281DRAFT_05831at 108.059 kb on + strand, within H281DRAFT_05831at 108.170 kb on + strand, within H281DRAFT_05831at 108.170 kb on + strand, within H281DRAFT_05831at 108.171 kb on - strand, within H281DRAFT_05831at 108.171 kb on - strand, within H281DRAFT_05831at 108.312 kb on - strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.395 kb on + strand, within H281DRAFT_05831at 108.404 kb on - strand, within H281DRAFT_05831at 108.579 kb on + strandat 108.579 kb on + strandat 108.580 kb on - strandat 108.584 kb on + strandat 108.584 kb on + strandat 108.595 kb on - strandat 108.595 kb on - strandat 108.663 kb on + strandat 108.663 kb on + strandat 108.663 kb on + strandat 108.664 kb on - strandat 108.667 kb on + strandat 108.667 kb on + strandat 108.667 kb on + strandat 108.668 kb on - strandat 108.668 kb on - strandat 108.668 kb on - strandat 108.695 kb on + strandat 108.696 kb on - strandat 108.705 kb on - strandat 108.705 kb on - strandat 108.705 kb on - strandat 108.707 kb on + strandat 108.707 kb on + strandat 108.708 kb on - strandat 108.708 kb on - strandat 108.765 kb on - strandat 108.765 kb on - strandat 109.020 kb on + strandat 109.021 kb on - strandat 109.021 kb on - strandat 109.021 kb on - strandat 109.021 kb on - strandat 109.210 kb on - strandat 109.517 kb on + strandat 109.517 kb on + strandat 109.517 kb on + strandat 109.538 kb on - strandat 109.538 kb on - strandat 109.538 kb on - strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.542 kb on - strandat 109.542 kb on - strandat 109.542 kb on - strandat 109.555 kb on - strandat 109.555 kb on - strandat 109.555 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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106,852 + -0.8
106,852 + +0.7
106,853 - +0.3
106,857 + +0.6
106,878 - -0.8
106,878 - +0.9
106,881 + -1.3
106,882 - +1.9
106,952 - -0.4
106,952 - +1.9
107,033 + -0.1
107,033 + +0.6
107,033 + +0.5
107,033 + -0.6
107,034 - -0.5
107,034 - +0.4
107,034 - +0.0
107,037 + -0.5
107,054 + -0.9
107,054 + +0.2
107,054 + -0.7
107,054 + -0.6
107,054 + +0.6
107,054 + -0.3
107,073 + +0.3
107,074 - -4.0
107,074 - +1.0
107,079 + +0.3
107,079 + -0.3
107,080 - +0.3
107,080 - -0.4
107,540 + H281DRAFT_05830 0.78 -1.7
107,540 + H281DRAFT_05830 0.78 +0.1
107,573 - -1.2
107,606 - +3.5
107,969 + H281DRAFT_05831 0.18 -0.3
107,969 + H281DRAFT_05831 0.18 +0.7
108,059 + H281DRAFT_05831 0.30 +0.3
108,170 + H281DRAFT_05831 0.45 -2.4
108,170 + H281DRAFT_05831 0.45 -0.3
108,171 - H281DRAFT_05831 0.45 +0.2
108,171 - H281DRAFT_05831 0.45 -2.5
108,312 - H281DRAFT_05831 0.63 -1.4
108,341 + H281DRAFT_05831 0.67 -0.3
108,341 + H281DRAFT_05831 0.67 -2.9
108,341 + H281DRAFT_05831 0.67 -2.6
108,341 + H281DRAFT_05831 0.67 +0.6
108,341 + H281DRAFT_05831 0.67 +1.6
108,342 - H281DRAFT_05831 0.67 +0.1
108,342 - H281DRAFT_05831 0.67 -0.6
108,342 - H281DRAFT_05831 0.67 -2.4
108,342 - H281DRAFT_05831 0.67 +0.7
108,395 + H281DRAFT_05831 0.75 +0.2
108,404 - H281DRAFT_05831 0.76 -1.2
108,579 + +0.5
108,579 + -0.4
108,580 - -0.7
108,584 + -1.3
108,584 + -1.7
108,595 - +0.6
108,595 - +0.8
108,663 + -0.7
108,663 + +0.6
108,663 + +0.0
108,664 - +0.4
108,667 + -3.1
108,667 + -0.5
108,667 + -1.0
108,668 - -0.7
108,668 - -0.7
108,668 - -0.4
108,695 + +1.8
108,696 - +0.1
108,705 - -0.2
108,705 - +0.5
108,705 - -1.5
108,707 + +0.1
108,707 + +0.1
108,708 - -0.6
108,708 - +0.9
108,765 - +2.2
108,765 - +0.4
109,020 + +0.7
109,021 - -0.6
109,021 - +0.3
109,021 - -0.6
109,021 - -0.7
109,210 - +0.5
109,517 + +1.3
109,517 + +0.4
109,517 + +0.0
109,538 - -0.3
109,538 - +0.6
109,538 - -0.7
109,541 + -0.4
109,541 + -0.4
109,541 + +0.2
109,541 + +0.3
109,541 + +0.1
109,541 + +1.5
109,542 - +0.3
109,542 - +0.6
109,542 - -0.2
109,555 - -1.2
109,555 - -0.4
109,555 - -1.3

Or see this region's nucleotide sequence