Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05743

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05742 and H281DRAFT_05743 are separated by 63 nucleotidesH281DRAFT_05743 and H281DRAFT_05744 are separated by 42 nucleotides H281DRAFT_05742: H281DRAFT_05742 - CheA signal transduction histidine kinase, at 13,782 to 16,058 _05742 H281DRAFT_05743: H281DRAFT_05743 - CheW protein, at 16,122 to 16,652 _05743 H281DRAFT_05744: H281DRAFT_05744 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 16,695 to 18,548 _05744 Position (kb) 16 17Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 15.720 kb on + strand, within H281DRAFT_05742at 15.720 kb on + strand, within H281DRAFT_05742at 15.721 kb on - strand, within H281DRAFT_05742at 15.721 kb on - strand, within H281DRAFT_05742at 16.078 kb on - strandat 16.093 kb on + strandat 16.094 kb on - strandat 16.098 kb on + strandat 16.098 kb on + strandat 16.119 kb on - strandat 16.223 kb on + strand, within H281DRAFT_05743at 16.242 kb on + strand, within H281DRAFT_05743at 16.545 kb on + strand, within H281DRAFT_05743at 16.545 kb on + strand, within H281DRAFT_05743at 16.650 kb on + strandat 16.651 kb on - strandat 16.699 kb on + strandat 16.700 kb on - strandat 16.700 kb on - strandat 16.700 kb on - strandat 16.700 kb on - strandat 16.774 kb on + strandat 16.872 kb on + strandat 16.872 kb on + strandat 16.873 kb on - strandat 16.975 kb on - strand, within H281DRAFT_05744at 17.178 kb on + strand, within H281DRAFT_05744

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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15,720 + H281DRAFT_05742 0.85 -0.9
15,720 + H281DRAFT_05742 0.85 -0.5
15,721 - H281DRAFT_05742 0.85 -0.1
15,721 - H281DRAFT_05742 0.85 -1.4
16,078 - +0.9
16,093 + +0.5
16,094 - -1.0
16,098 + -0.4
16,098 + -0.2
16,119 - -0.6
16,223 + H281DRAFT_05743 0.19 -1.0
16,242 + H281DRAFT_05743 0.23 -0.9
16,545 + H281DRAFT_05743 0.80 -0.3
16,545 + H281DRAFT_05743 0.80 -1.9
16,650 + +0.3
16,651 - -0.1
16,699 + +0.9
16,700 - +1.5
16,700 - +1.3
16,700 - -2.3
16,700 - -0.0
16,774 + -0.6
16,872 + -2.0
16,872 + +2.5
16,873 - +1.0
16,975 - H281DRAFT_05744 0.15 -2.9
17,178 + H281DRAFT_05744 0.26 -0.6

Or see this region's nucleotide sequence