Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05412

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05411 and H281DRAFT_05412 are separated by 452 nucleotidesH281DRAFT_05412 and H281DRAFT_05413 are separated by 264 nucleotides H281DRAFT_05411: H281DRAFT_05411 - Predicted periplasmic or secreted lipoprotein, at 175,380 to 175,745 _05411 H281DRAFT_05412: H281DRAFT_05412 - DNA-3-methyladenine glycosylase, at 176,198 to 176,845 _05412 H281DRAFT_05413: H281DRAFT_05413 - protein of unknown function (DUF4148), at 177,110 to 177,454 _05413 Position (kb) 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 175.269 kb on - strandat 175.290 kb on - strandat 175.769 kb on - strandat 175.769 kb on - strandat 175.804 kb on - strandat 176.099 kb on + strandat 176.100 kb on - strandat 176.110 kb on + strandat 176.110 kb on + strandat 176.317 kb on + strand, within H281DRAFT_05412at 176.318 kb on - strand, within H281DRAFT_05412at 176.349 kb on - strand, within H281DRAFT_05412at 176.396 kb on + strand, within H281DRAFT_05412at 176.432 kb on + strand, within H281DRAFT_05412at 176.433 kb on - strand, within H281DRAFT_05412at 176.448 kb on - strand, within H281DRAFT_05412at 176.448 kb on - strand, within H281DRAFT_05412at 176.454 kb on + strand, within H281DRAFT_05412at 176.459 kb on + strand, within H281DRAFT_05412at 176.460 kb on - strandat 176.460 kb on - strand, within H281DRAFT_05412at 176.470 kb on + strand, within H281DRAFT_05412at 176.471 kb on - strand, within H281DRAFT_05412at 176.609 kb on - strand, within H281DRAFT_05412at 176.609 kb on - strand, within H281DRAFT_05412at 176.609 kb on - strand, within H281DRAFT_05412at 176.873 kb on + strandat 176.873 kb on + strandat 176.878 kb on - strandat 176.878 kb on - strandat 176.926 kb on + strandat 176.927 kb on - strandat 176.996 kb on + strandat 176.996 kb on + strandat 176.997 kb on - strandat 176.997 kb on - strandat 176.997 kb on - strandat 176.997 kb on - strandat 177.001 kb on - strandat 177.001 kb on - strandat 177.001 kb on - strandat 177.040 kb on + strandat 177.040 kb on + strandat 177.102 kb on + strandat 177.102 kb on + strandat 177.105 kb on + strandat 177.106 kb on - strandat 177.106 kb on - strandat 177.106 kb on - strandat 177.121 kb on + strandat 177.245 kb on + strand, within H281DRAFT_05413at 177.246 kb on - strand, within H281DRAFT_05413at 177.276 kb on - strand, within H281DRAFT_05413at 177.419 kb on - strand, within H281DRAFT_05413at 177.419 kb on - strand, within H281DRAFT_05413at 177.419 kb on - strand, within H281DRAFT_05413at 177.419 kb on - strand, within H281DRAFT_05413at 177.440 kb on + strandat 177.453 kb on - strandat 177.453 kb on - strandat 177.453 kb on - strandat 177.522 kb on - strandat 177.611 kb on - strandat 177.769 kb on + strandat 177.770 kb on - strandat 177.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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175,269 - -0.4
175,290 - -1.1
175,769 - +0.5
175,769 - -2.4
175,804 - -0.3
176,099 + -1.1
176,100 - -0.2
176,110 + -2.7
176,110 + -0.3
176,317 + H281DRAFT_05412 0.18 +0.3
176,318 - H281DRAFT_05412 0.19 +0.8
176,349 - H281DRAFT_05412 0.23 -1.4
176,396 + H281DRAFT_05412 0.31 +0.3
176,432 + H281DRAFT_05412 0.36 +0.9
176,433 - H281DRAFT_05412 0.36 -0.1
176,448 - H281DRAFT_05412 0.39 +0.1
176,448 - H281DRAFT_05412 0.39 -2.5
176,454 + H281DRAFT_05412 0.40 +0.2
176,459 + H281DRAFT_05412 0.40 -0.1
176,460 - +1.0
176,460 - H281DRAFT_05412 0.40 -1.1
176,470 + H281DRAFT_05412 0.42 -0.3
176,471 - H281DRAFT_05412 0.42 -0.4
176,609 - H281DRAFT_05412 0.63 -0.9
176,609 - H281DRAFT_05412 0.63 -3.2
176,609 - H281DRAFT_05412 0.63 -1.4
176,873 + +0.3
176,873 + -0.3
176,878 - -0.1
176,878 - -0.0
176,926 + +0.6
176,927 - -0.7
176,996 + +0.4
176,996 + -0.7
176,997 - +0.2
176,997 - +0.5
176,997 - +0.8
176,997 - -2.9
177,001 - -1.4
177,001 - +0.4
177,001 - +0.2
177,040 + -1.6
177,040 + -0.5
177,102 + +0.4
177,102 + +1.3
177,105 + +0.0
177,106 - -0.2
177,106 - +0.0
177,106 - -1.1
177,121 + -3.7
177,245 + H281DRAFT_05413 0.39 +0.6
177,246 - H281DRAFT_05413 0.39 -0.3
177,276 - H281DRAFT_05413 0.48 +1.4
177,419 - H281DRAFT_05413 0.90 +0.4
177,419 - H281DRAFT_05413 0.90 -0.8
177,419 - H281DRAFT_05413 0.90 -1.2
177,419 - H281DRAFT_05413 0.90 -0.8
177,440 + +0.3
177,453 - +3.6
177,453 - +0.7
177,453 - -0.1
177,522 - +0.1
177,611 - -2.2
177,769 + +1.6
177,770 - +0.9
177,809 + -1.7

Or see this region's nucleotide sequence