Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05378

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05377 and H281DRAFT_05378 are separated by 44 nucleotidesH281DRAFT_05378 and H281DRAFT_05379 are separated by 781 nucleotides H281DRAFT_05377: H281DRAFT_05377 - Inosine-uridine nucleoside N-ribohydrolase, at 134,724 to 135,860 _05377 H281DRAFT_05378: H281DRAFT_05378 - transcriptional regulator, LysR family, at 135,905 to 136,861 _05378 H281DRAFT_05379: H281DRAFT_05379 - uncharacterized zinc-type alcohol dehydrogenase-like protein, at 137,643 to 138,695 _05379 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 135.025 kb on - strandat 135.039 kb on + strand, within H281DRAFT_05377at 135.339 kb on + strand, within H281DRAFT_05377at 135.339 kb on + strand, within H281DRAFT_05377at 135.339 kb on + strand, within H281DRAFT_05377at 135.339 kb on + strand, within H281DRAFT_05377at 135.339 kb on + strand, within H281DRAFT_05377at 135.340 kb on - strand, within H281DRAFT_05377at 135.371 kb on + strand, within H281DRAFT_05377at 135.492 kb on - strand, within H281DRAFT_05377at 135.502 kb on - strand, within H281DRAFT_05377at 135.543 kb on - strand, within H281DRAFT_05377at 135.571 kb on - strand, within H281DRAFT_05377at 135.820 kb on - strandat 135.863 kb on + strandat 135.863 kb on + strandat 135.864 kb on - strandat 135.878 kb on - strandat 136.085 kb on + strand, within H281DRAFT_05378at 136.085 kb on + strand, within H281DRAFT_05378at 136.086 kb on - strand, within H281DRAFT_05378at 136.176 kb on + strand, within H281DRAFT_05378at 136.177 kb on - strand, within H281DRAFT_05378at 136.271 kb on - strand, within H281DRAFT_05378at 136.324 kb on + strand, within H281DRAFT_05378at 136.468 kb on + strand, within H281DRAFT_05378at 136.468 kb on + strand, within H281DRAFT_05378at 136.468 kb on + strand, within H281DRAFT_05378at 136.507 kb on - strand, within H281DRAFT_05378at 136.514 kb on - strand, within H281DRAFT_05378at 136.514 kb on - strand, within H281DRAFT_05378at 136.663 kb on - strand, within H281DRAFT_05378at 136.665 kb on + strand, within H281DRAFT_05378at 136.857 kb on - strandat 136.927 kb on + strandat 136.927 kb on + strandat 136.983 kb on + strandat 137.066 kb on + strandat 137.073 kb on + strandat 137.073 kb on + strandat 137.073 kb on + strandat 137.073 kb on + strandat 137.074 kb on - strandat 137.158 kb on + strandat 137.159 kb on - strandat 137.294 kb on + strandat 137.418 kb on + strandat 137.453 kb on - strandat 137.453 kb on - strandat 137.509 kb on + strandat 137.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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135,025 - +0.0
135,039 + H281DRAFT_05377 0.28 -1.1
135,339 + H281DRAFT_05377 0.54 +0.8
135,339 + H281DRAFT_05377 0.54 -0.7
135,339 + H281DRAFT_05377 0.54 -0.4
135,339 + H281DRAFT_05377 0.54 +2.3
135,339 + H281DRAFT_05377 0.54 +1.7
135,340 - H281DRAFT_05377 0.54 +1.0
135,371 + H281DRAFT_05377 0.57 +0.6
135,492 - H281DRAFT_05377 0.68 -2.8
135,502 - H281DRAFT_05377 0.68 +0.5
135,543 - H281DRAFT_05377 0.72 -0.7
135,571 - H281DRAFT_05377 0.74 -0.7
135,820 - -0.0
135,863 + -2.6
135,863 + +1.6
135,864 - -0.1
135,878 - +0.0
136,085 + H281DRAFT_05378 0.19 +0.1
136,085 + H281DRAFT_05378 0.19 -2.0
136,086 - H281DRAFT_05378 0.19 -0.2
136,176 + H281DRAFT_05378 0.28 +0.7
136,177 - H281DRAFT_05378 0.28 +1.9
136,271 - H281DRAFT_05378 0.38 -0.4
136,324 + H281DRAFT_05378 0.44 -1.6
136,468 + H281DRAFT_05378 0.59 -0.1
136,468 + H281DRAFT_05378 0.59 -0.4
136,468 + H281DRAFT_05378 0.59 +0.8
136,507 - H281DRAFT_05378 0.63 +0.2
136,514 - H281DRAFT_05378 0.64 +0.3
136,514 - H281DRAFT_05378 0.64 -0.3
136,663 - H281DRAFT_05378 0.79 +0.0
136,665 + H281DRAFT_05378 0.79 -0.7
136,857 - -0.4
136,927 + +0.2
136,927 + +0.7
136,983 + +2.1
137,066 + +1.4
137,073 + +0.1
137,073 + -0.1
137,073 + +0.4
137,073 + +0.8
137,074 - -0.2
137,158 + +0.6
137,159 - +0.5
137,294 + +1.4
137,418 + -0.3
137,453 - -0.7
137,453 - -1.4
137,509 + +1.3
137,615 - +0.2

Or see this region's nucleotide sequence