Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05303

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05302 and H281DRAFT_05303 are separated by 9 nucleotidesH281DRAFT_05303 and H281DRAFT_05304 are separated by 193 nucleotides H281DRAFT_05302: H281DRAFT_05302 - FAD/FMN-containing dehydrogenase, at 44,546 to 45,979 _05302 H281DRAFT_05303: H281DRAFT_05303 - cholesterol oxidase, at 45,989 to 49,399 _05303 H281DRAFT_05304: H281DRAFT_05304 - hypothetical protein, at 49,593 to 50,384 _05304 Position (kb) 45 46 47 48 49 50Strain fitness (log2 ratio) -1 0 1 2 3at 45.432 kb on - strandat 46.323 kb on - strandat 46.323 kb on - strandat 46.809 kb on - strand, within H281DRAFT_05303at 46.854 kb on + strand, within H281DRAFT_05303at 47.734 kb on + strand, within H281DRAFT_05303at 47.817 kb on + strand, within H281DRAFT_05303at 48.218 kb on + strand, within H281DRAFT_05303at 48.454 kb on - strand, within H281DRAFT_05303at 48.744 kb on + strand, within H281DRAFT_05303at 48.745 kb on - strand, within H281DRAFT_05303at 49.399 kb on + strandat 50.245 kb on + strand, within H281DRAFT_05304

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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45,432 - -1.4
46,323 - +0.7
46,323 - +0.9
46,809 - H281DRAFT_05303 0.24 -0.3
46,854 + H281DRAFT_05303 0.25 -0.0
47,734 + H281DRAFT_05303 0.51 +2.8
47,817 + H281DRAFT_05303 0.54 +0.8
48,218 + H281DRAFT_05303 0.65 -0.7
48,454 - H281DRAFT_05303 0.72 -1.6
48,744 + H281DRAFT_05303 0.81 +0.9
48,745 - H281DRAFT_05303 0.81 -1.2
49,399 + -1.4
50,245 + H281DRAFT_05304 0.82 +1.9

Or see this region's nucleotide sequence