Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04199

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04197 and H281DRAFT_04198 overlap by 8 nucleotidesH281DRAFT_04198 and H281DRAFT_04199 are separated by 113 nucleotidesH281DRAFT_04199 and H281DRAFT_04200 are separated by 53 nucleotidesH281DRAFT_04200 and H281DRAFT_04201 are separated by 52 nucleotides H281DRAFT_04197: H281DRAFT_04197 - hypothetical protein, at 315,928 to 317,103 _04197 H281DRAFT_04198: H281DRAFT_04198 - Protein of unknown function (DUF2946), at 317,096 to 317,668 _04198 H281DRAFT_04199: H281DRAFT_04199 - Putative Zn-dependent protease, contains TPR repeats, at 317,782 to 319,650 _04199 H281DRAFT_04200: H281DRAFT_04200 - cyclic pyranopterin monophosphate synthase subunit MoaC, at 319,704 to 320,180 _04200 H281DRAFT_04201: H281DRAFT_04201 - O-antigen ligase, at 320,233 to 322,050 _04201 Position (kb) 317 318 319 320Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 316.792 kb on + strand, within H281DRAFT_04197at 316.792 kb on + strand, within H281DRAFT_04197at 316.793 kb on - strand, within H281DRAFT_04197at 316.849 kb on + strand, within H281DRAFT_04197at 316.850 kb on - strand, within H281DRAFT_04197at 316.850 kb on - strand, within H281DRAFT_04197at 317.188 kb on + strand, within H281DRAFT_04198at 317.273 kb on + strand, within H281DRAFT_04198at 317.325 kb on + strand, within H281DRAFT_04198at 317.325 kb on + strand, within H281DRAFT_04198at 317.325 kb on + strand, within H281DRAFT_04198at 317.325 kb on + strand, within H281DRAFT_04198at 317.325 kb on + strand, within H281DRAFT_04198at 317.325 kb on + strand, within H281DRAFT_04198at 317.327 kb on + strand, within H281DRAFT_04198at 317.327 kb on + strand, within H281DRAFT_04198at 317.327 kb on + strand, within H281DRAFT_04198at 317.327 kb on + strand, within H281DRAFT_04198at 317.328 kb on - strand, within H281DRAFT_04198at 317.328 kb on - strand, within H281DRAFT_04198at 317.328 kb on - strand, within H281DRAFT_04198at 317.328 kb on - strand, within H281DRAFT_04198at 317.328 kb on - strand, within H281DRAFT_04198at 317.328 kb on - strand, within H281DRAFT_04198at 317.328 kb on - strand, within H281DRAFT_04198at 317.328 kb on - strandat 317.342 kb on + strand, within H281DRAFT_04198at 317.367 kb on + strand, within H281DRAFT_04198at 317.783 kb on + strandat 317.861 kb on + strandat 317.861 kb on + strandat 317.862 kb on - strandat 317.862 kb on - strandat 317.864 kb on + strandat 317.865 kb on - strandat 318.002 kb on + strand, within H281DRAFT_04199at 318.002 kb on + strand, within H281DRAFT_04199at 318.069 kb on + strand, within H281DRAFT_04199at 318.097 kb on + strand, within H281DRAFT_04199at 318.098 kb on - strand, within H281DRAFT_04199at 318.308 kb on + strand, within H281DRAFT_04199at 318.344 kb on + strand, within H281DRAFT_04199at 318.344 kb on + strand, within H281DRAFT_04199at 318.633 kb on - strand, within H281DRAFT_04199at 318.641 kb on + strand, within H281DRAFT_04199at 318.642 kb on - strand, within H281DRAFT_04199at 318.642 kb on - strand, within H281DRAFT_04199at 318.728 kb on + strand, within H281DRAFT_04199at 318.728 kb on + strand, within H281DRAFT_04199at 318.728 kb on + strand, within H281DRAFT_04199at 318.729 kb on - strand, within H281DRAFT_04199at 318.825 kb on - strand, within H281DRAFT_04199at 318.825 kb on - strand, within H281DRAFT_04199at 318.861 kb on + strand, within H281DRAFT_04199at 319.040 kb on + strand, within H281DRAFT_04199at 319.040 kb on + strand, within H281DRAFT_04199at 319.041 kb on - strand, within H281DRAFT_04199at 319.041 kb on - strand, within H281DRAFT_04199at 319.096 kb on + strand, within H281DRAFT_04199at 319.097 kb on - strand, within H281DRAFT_04199at 319.180 kb on - strand, within H281DRAFT_04199at 319.328 kb on + strand, within H281DRAFT_04199at 319.380 kb on - strand, within H281DRAFT_04199at 319.588 kb on + strandat 319.588 kb on + strandat 319.589 kb on - strandat 319.593 kb on + strandat 319.614 kb on + strandat 319.614 kb on + strandat 319.615 kb on - strandat 319.615 kb on - strandat 319.674 kb on + strandat 319.674 kb on + strandat 319.675 kb on - strandat 319.675 kb on - strandat 319.679 kb on + strandat 319.680 kb on - strandat 320.216 kb on + strandat 320.217 kb on - strandat 320.345 kb on + strandat 320.346 kb on - strandat 320.351 kb on + strandat 320.351 kb on + strandat 320.636 kb on + strand, within H281DRAFT_04201

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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316,792 + H281DRAFT_04197 0.73 -0.3
316,792 + H281DRAFT_04197 0.73 -0.1
316,793 - H281DRAFT_04197 0.74 +0.7
316,849 + H281DRAFT_04197 0.78 -0.1
316,850 - H281DRAFT_04197 0.78 -1.0
316,850 - H281DRAFT_04197 0.78 +0.2
317,188 + H281DRAFT_04198 0.16 -2.4
317,273 + H281DRAFT_04198 0.31 -1.5
317,325 + H281DRAFT_04198 0.40 +0.2
317,325 + H281DRAFT_04198 0.40 +0.4
317,325 + H281DRAFT_04198 0.40 -0.9
317,325 + H281DRAFT_04198 0.40 +1.2
317,325 + H281DRAFT_04198 0.40 +0.4
317,325 + H281DRAFT_04198 0.40 +0.2
317,327 + H281DRAFT_04198 0.40 -0.9
317,327 + H281DRAFT_04198 0.40 +1.0
317,327 + H281DRAFT_04198 0.40 -0.8
317,327 + H281DRAFT_04198 0.40 -1.4
317,328 - H281DRAFT_04198 0.40 -1.2
317,328 - H281DRAFT_04198 0.40 -2.7
317,328 - H281DRAFT_04198 0.40 +0.5
317,328 - H281DRAFT_04198 0.40 +0.2
317,328 - H281DRAFT_04198 0.40 +0.0
317,328 - H281DRAFT_04198 0.40 +0.9
317,328 - H281DRAFT_04198 0.40 +0.6
317,328 - -1.8
317,342 + H281DRAFT_04198 0.43 +0.4
317,367 + H281DRAFT_04198 0.47 +1.2
317,783 + +0.9
317,861 + -0.5
317,861 + -0.7
317,862 - -0.1
317,862 - -0.2
317,864 + +0.9
317,865 - +0.9
318,002 + H281DRAFT_04199 0.12 +0.4
318,002 + H281DRAFT_04199 0.12 +0.7
318,069 + H281DRAFT_04199 0.15 +0.5
318,097 + H281DRAFT_04199 0.17 -1.6
318,098 - H281DRAFT_04199 0.17 -2.0
318,308 + H281DRAFT_04199 0.28 +0.4
318,344 + H281DRAFT_04199 0.30 +0.3
318,344 + H281DRAFT_04199 0.30 -2.2
318,633 - H281DRAFT_04199 0.46 -1.4
318,641 + H281DRAFT_04199 0.46 +0.4
318,642 - H281DRAFT_04199 0.46 -2.1
318,642 - H281DRAFT_04199 0.46 +0.5
318,728 + H281DRAFT_04199 0.51 +1.5
318,728 + H281DRAFT_04199 0.51 -1.1
318,728 + H281DRAFT_04199 0.51 +0.5
318,729 - H281DRAFT_04199 0.51 +0.6
318,825 - H281DRAFT_04199 0.56 +0.1
318,825 - H281DRAFT_04199 0.56 +0.4
318,861 + H281DRAFT_04199 0.58 +0.6
319,040 + H281DRAFT_04199 0.67 +0.5
319,040 + H281DRAFT_04199 0.67 -0.0
319,041 - H281DRAFT_04199 0.67 -2.8
319,041 - H281DRAFT_04199 0.67 +0.6
319,096 + H281DRAFT_04199 0.70 +0.8
319,097 - H281DRAFT_04199 0.70 -1.6
319,180 - H281DRAFT_04199 0.75 +0.6
319,328 + H281DRAFT_04199 0.83 -3.4
319,380 - H281DRAFT_04199 0.86 -0.9
319,588 + -0.4
319,588 + -0.7
319,589 - +0.7
319,593 + +2.4
319,614 + +0.2
319,614 + +1.3
319,615 - -0.3
319,615 - -1.0
319,674 + +0.9
319,674 + -1.3
319,675 - +1.0
319,675 - +1.2
319,679 + -1.8
319,680 - +0.1
320,216 + +0.8
320,217 - +0.8
320,345 + -1.0
320,346 - -1.5
320,351 + -0.8
320,351 + -0.8
320,636 + H281DRAFT_04201 0.22 +1.0

Or see this region's nucleotide sequence