Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03530

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03528 and H281DRAFT_03529 are separated by 78 nucleotidesH281DRAFT_03529 and H281DRAFT_03530 are separated by 39 nucleotidesH281DRAFT_03530 and H281DRAFT_03531 overlap by 4 nucleotides H281DRAFT_03528: H281DRAFT_03528 - ureidoglycolate lyase, at 26,684 to 27,532 _03528 H281DRAFT_03529: H281DRAFT_03529 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 27,611 to 28,354 _03529 H281DRAFT_03530: H281DRAFT_03530 - L-fuconolactonase, at 28,394 to 29,236 _03530 H281DRAFT_03531: H281DRAFT_03531 - D-threo-aldose 1-dehydrogenase, at 29,233 to 30,273 _03531 Position (kb) 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 27.447 kb on - strand, within H281DRAFT_03528at 27.447 kb on - strand, within H281DRAFT_03528at 27.571 kb on + strandat 27.571 kb on + strandat 27.571 kb on + strandat 27.571 kb on + strandat 27.605 kb on + strandat 27.605 kb on + strandat 27.848 kb on - strand, within H281DRAFT_03529at 27.854 kb on + strand, within H281DRAFT_03529at 27.854 kb on + strand, within H281DRAFT_03529at 27.854 kb on + strand, within H281DRAFT_03529at 27.854 kb on + strand, within H281DRAFT_03529at 27.924 kb on + strand, within H281DRAFT_03529at 27.924 kb on + strand, within H281DRAFT_03529at 27.925 kb on - strand, within H281DRAFT_03529at 27.973 kb on + strand, within H281DRAFT_03529at 27.973 kb on + strand, within H281DRAFT_03529at 27.974 kb on - strand, within H281DRAFT_03529at 27.974 kb on - strand, within H281DRAFT_03529at 27.974 kb on - strand, within H281DRAFT_03529at 27.974 kb on - strand, within H281DRAFT_03529at 27.974 kb on - strand, within H281DRAFT_03529at 27.974 kb on - strand, within H281DRAFT_03529at 28.035 kb on + strand, within H281DRAFT_03529at 28.378 kb on - strandat 28.561 kb on + strand, within H281DRAFT_03530at 28.562 kb on - strand, within H281DRAFT_03530at 28.806 kb on + strand, within H281DRAFT_03530at 28.807 kb on - strand, within H281DRAFT_03530at 29.040 kb on + strand, within H281DRAFT_03530at 29.142 kb on + strand, within H281DRAFT_03530at 29.176 kb on - strandat 29.176 kb on - strandat 29.176 kb on - strandat 29.199 kb on + strandat 29.628 kb on + strand, within H281DRAFT_03531at 29.629 kb on - strand, within H281DRAFT_03531at 29.629 kb on - strand, within H281DRAFT_03531at 29.630 kb on + strand, within H281DRAFT_03531at 29.686 kb on + strand, within H281DRAFT_03531at 29.686 kb on + strand, within H281DRAFT_03531at 29.686 kb on + strand, within H281DRAFT_03531at 29.687 kb on - strand, within H281DRAFT_03531at 29.687 kb on - strand, within H281DRAFT_03531at 29.687 kb on - strand, within H281DRAFT_03531at 29.796 kb on + strand, within H281DRAFT_03531at 29.797 kb on - strand, within H281DRAFT_03531at 29.797 kb on - strand, within H281DRAFT_03531at 29.797 kb on - strand, within H281DRAFT_03531at 29.899 kb on - strand, within H281DRAFT_03531at 30.017 kb on + strand, within H281DRAFT_03531at 30.017 kb on + strand, within H281DRAFT_03531at 30.018 kb on - strand, within H281DRAFT_03531at 30.018 kb on - strand, within H281DRAFT_03531at 30.102 kb on - strand, within H281DRAFT_03531at 30.208 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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27,447 - H281DRAFT_03528 0.90 -0.2
27,447 - H281DRAFT_03528 0.90 +0.9
27,571 + -0.0
27,571 + +0.1
27,571 + -0.0
27,571 + -0.4
27,605 + +0.3
27,605 + +0.8
27,848 - H281DRAFT_03529 0.32 +0.1
27,854 + H281DRAFT_03529 0.33 -0.4
27,854 + H281DRAFT_03529 0.33 -0.1
27,854 + H281DRAFT_03529 0.33 +0.3
27,854 + H281DRAFT_03529 0.33 -0.4
27,924 + H281DRAFT_03529 0.42 +2.8
27,924 + H281DRAFT_03529 0.42 +2.0
27,925 - H281DRAFT_03529 0.42 +0.9
27,973 + H281DRAFT_03529 0.49 +1.0
27,973 + H281DRAFT_03529 0.49 +0.6
27,974 - H281DRAFT_03529 0.49 +1.2
27,974 - H281DRAFT_03529 0.49 -0.5
27,974 - H281DRAFT_03529 0.49 -1.0
27,974 - H281DRAFT_03529 0.49 +0.4
27,974 - H281DRAFT_03529 0.49 +0.5
27,974 - H281DRAFT_03529 0.49 +2.0
28,035 + H281DRAFT_03529 0.57 +0.0
28,378 - -0.4
28,561 + H281DRAFT_03530 0.20 -0.9
28,562 - H281DRAFT_03530 0.20 +0.7
28,806 + H281DRAFT_03530 0.49 -1.5
28,807 - H281DRAFT_03530 0.49 +0.4
29,040 + H281DRAFT_03530 0.77 +0.9
29,142 + H281DRAFT_03530 0.89 +1.2
29,176 - +0.4
29,176 - +0.5
29,176 - -0.1
29,199 + +0.4
29,628 + H281DRAFT_03531 0.38 -0.5
29,629 - H281DRAFT_03531 0.38 +0.3
29,629 - H281DRAFT_03531 0.38 -0.1
29,630 + H281DRAFT_03531 0.38 -0.6
29,686 + H281DRAFT_03531 0.44 -0.2
29,686 + H281DRAFT_03531 0.44 -1.2
29,686 + H281DRAFT_03531 0.44 +0.4
29,687 - H281DRAFT_03531 0.44 -1.4
29,687 - H281DRAFT_03531 0.44 -0.1
29,687 - H281DRAFT_03531 0.44 +0.2
29,796 + H281DRAFT_03531 0.54 +1.1
29,797 - H281DRAFT_03531 0.54 +3.0
29,797 - H281DRAFT_03531 0.54 -3.1
29,797 - H281DRAFT_03531 0.54 -1.6
29,899 - H281DRAFT_03531 0.64 -0.3
30,017 + H281DRAFT_03531 0.75 -0.7
30,017 + H281DRAFT_03531 0.75 +0.0
30,018 - H281DRAFT_03531 0.75 -0.0
30,018 - H281DRAFT_03531 0.75 -1.6
30,102 - H281DRAFT_03531 0.83 +0.7
30,208 + +0.8

Or see this region's nucleotide sequence