Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03087

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03086 and H281DRAFT_03087 are separated by 549 nucleotidesH281DRAFT_03087 and H281DRAFT_03088 are separated by 349 nucleotidesH281DRAFT_03088 and H281DRAFT_03089 are separated by 148 nucleotides H281DRAFT_03086: H281DRAFT_03086 - protein of unknown function (DUF4410), at 115,642 to 116,409 _03086 H281DRAFT_03087: H281DRAFT_03087 - hypothetical protein, at 116,959 to 117,435 _03087 H281DRAFT_03088: H281DRAFT_03088 - phasin family protein, at 117,785 to 118,222 _03088 H281DRAFT_03089: H281DRAFT_03089 - hypothetical protein, at 118,371 to 119,495 _03089 Position (kb) 116 117 118Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 116.056 kb on + strand, within H281DRAFT_03086at 116.056 kb on + strand, within H281DRAFT_03086at 116.056 kb on + strand, within H281DRAFT_03086at 116.178 kb on + strand, within H281DRAFT_03086at 116.252 kb on + strand, within H281DRAFT_03086at 116.253 kb on - strand, within H281DRAFT_03086at 116.452 kb on + strandat 116.453 kb on - strandat 116.501 kb on - strandat 116.565 kb on + strandat 116.830 kb on + strandat 116.884 kb on + strandat 116.884 kb on + strandat 116.960 kb on + strandat 117.108 kb on - strand, within H281DRAFT_03087at 117.108 kb on - strand, within H281DRAFT_03087at 117.108 kb on - strand, within H281DRAFT_03087at 117.315 kb on + strand, within H281DRAFT_03087at 117.769 kb on + strandat 118.137 kb on - strand, within H281DRAFT_03088at 118.325 kb on - strandat 118.372 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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116,056 + H281DRAFT_03086 0.54 +0.4
116,056 + H281DRAFT_03086 0.54 -0.1
116,056 + H281DRAFT_03086 0.54 +0.2
116,178 + H281DRAFT_03086 0.70 +1.1
116,252 + H281DRAFT_03086 0.79 +0.9
116,253 - H281DRAFT_03086 0.80 -1.5
116,452 + +2.3
116,453 - +0.7
116,501 - -0.2
116,565 + -1.7
116,830 + -3.4
116,884 + +0.7
116,884 + +1.2
116,960 + +0.7
117,108 - H281DRAFT_03087 0.31 -0.6
117,108 - H281DRAFT_03087 0.31 +1.5
117,108 - H281DRAFT_03087 0.31 +0.9
117,315 + H281DRAFT_03087 0.75 -0.5
117,769 + -0.8
118,137 - H281DRAFT_03088 0.80 -0.1
118,325 - -0.2
118,372 + -0.1

Or see this region's nucleotide sequence