Experiment: Bu1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02558 and H281DRAFT_02559 overlap by 8 nucleotides H281DRAFT_02559 and H281DRAFT_02560 are separated by 165 nucleotides H281DRAFT_02560 and H281DRAFT_02561 are separated by 251 nucleotides H281DRAFT_02561 and H281DRAFT_02562 are separated by 20 nucleotides
H281DRAFT_02558: H281DRAFT_02558 - hypothetical protein, at 133,072 to 133,248
_02558
H281DRAFT_02559: H281DRAFT_02559 - hypothetical protein, at 133,241 to 133,630
_02559
H281DRAFT_02560: H281DRAFT_02560 - LPS-assembly protein, at 133,796 to 136,081
_02560
H281DRAFT_02561: H281DRAFT_02561 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 136,333 to 137,028
_02561
H281DRAFT_02562: H281DRAFT_02562 - Glycine/D-amino acid oxidase (deaminating), at 137,049 to 138,389
_02562
Position (kb) 133
134
135
136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 133.392 kb on + strand, within H281DRAFT_02559 at 133.818 kb on + strand at 133.818 kb on + strand at 134.147 kb on + strand, within H281DRAFT_02560 at 134.724 kb on - strand, within H281DRAFT_02560 at 134.810 kb on + strand, within H281DRAFT_02560 at 134.944 kb on + strand, within H281DRAFT_02560 at 135.272 kb on + strand, within H281DRAFT_02560 at 135.629 kb on + strand, within H281DRAFT_02560 at 135.896 kb on + strand at 136.172 kb on + strand at 136.172 kb on + strand at 136.173 kb on - strand at 136.405 kb on - strand, within H281DRAFT_02561 at 136.911 kb on - strand, within H281DRAFT_02561 at 136.935 kb on + strand, within H281DRAFT_02561
Per-strain Table
Position Strand Gene LocusTag Fraction Bu1_10 remove 133,392 + H281DRAFT_02559 0.39 -1.4 133,818 + +0.4 133,818 + -1.2 134,147 + H281DRAFT_02560 0.15 +1.5 134,724 - H281DRAFT_02560 0.41 -0.1 134,810 + H281DRAFT_02560 0.44 +0.3 134,944 + H281DRAFT_02560 0.50 -1.5 135,272 + H281DRAFT_02560 0.65 -1.8 135,629 + H281DRAFT_02560 0.80 -2.4 135,896 + -2.4 136,172 + -0.7 136,172 + -0.1 136,173 - +0.8 136,405 - H281DRAFT_02561 0.10 -0.0 136,911 - H281DRAFT_02561 0.83 +0.4 136,935 + H281DRAFT_02561 0.86 -2.9
Or see this region's nucleotide sequence