Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01583

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01582 and H281DRAFT_01583 overlap by 4 nucleotidesH281DRAFT_01583 and H281DRAFT_01584 are separated by 31 nucleotides H281DRAFT_01582: H281DRAFT_01582 - nicotinate dehydrogenase subunit B, at 458,242 to 461,865 _01582 H281DRAFT_01583: H281DRAFT_01583 - nicotinate dehydrogenase subunit A, at 461,862 to 462,368 _01583 H281DRAFT_01584: H281DRAFT_01584 - enamidase, at 462,400 to 463,599 _01584 Position (kb) 461 462 463Strain fitness (log2 ratio) -1 0 1at 461.259 kb on - strand, within H281DRAFT_01582at 461.561 kb on - strandat 461.697 kb on + strandat 461.805 kb on - strandat 462.436 kb on - strandat 462.885 kb on + strand, within H281DRAFT_01584

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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461,259 - H281DRAFT_01582 0.83 -1.2
461,561 - +1.1
461,697 + -0.8
461,805 - +1.1
462,436 - +1.0
462,885 + H281DRAFT_01584 0.40 +0.9

Or see this region's nucleotide sequence