Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01419

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01418 and H281DRAFT_01419 are separated by 502 nucleotidesH281DRAFT_01419 and H281DRAFT_01420 are separated by 82 nucleotides H281DRAFT_01418: H281DRAFT_01418 - Signal transduction histidine kinase, at 270,216 to 274,808 _01418 H281DRAFT_01419: H281DRAFT_01419 - Protein of unknown function (DUF2945), at 275,311 to 275,526 _01419 H281DRAFT_01420: H281DRAFT_01420 - oxidoreductase alpha (molybdopterin) subunit, at 275,609 to 278,026 _01420 Position (kb) 275 276Strain fitness (log2 ratio) -1 0 1 2at 274.402 kb on + strandat 274.465 kb on - strandat 274.840 kb on + strandat 274.851 kb on + strandat 274.986 kb on - strandat 275.344 kb on - strand, within H281DRAFT_01419at 275.385 kb on - strand, within H281DRAFT_01419at 275.594 kb on - strandat 275.835 kb on + strandat 275.836 kb on - strandat 276.042 kb on + strand, within H281DRAFT_01420at 276.074 kb on + strand, within H281DRAFT_01420at 276.089 kb on + strand, within H281DRAFT_01420at 276.133 kb on + strand, within H281DRAFT_01420at 276.195 kb on + strandat 276.222 kb on - strand, within H281DRAFT_01420

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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274,402 + +1.1
274,465 - +0.7
274,840 + -0.4
274,851 + +0.4
274,986 - -0.5
275,344 - H281DRAFT_01419 0.15 +1.8
275,385 - H281DRAFT_01419 0.34 -1.4
275,594 - -0.5
275,835 + +0.0
275,836 - +0.4
276,042 + H281DRAFT_01420 0.18 -0.6
276,074 + H281DRAFT_01420 0.19 +0.2
276,089 + H281DRAFT_01420 0.20 +0.2
276,133 + H281DRAFT_01420 0.22 -0.9
276,195 + +1.9
276,222 - H281DRAFT_01420 0.25 -0.7

Or see this region's nucleotide sequence