Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01278

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01277 and H281DRAFT_01278 are separated by 120 nucleotidesH281DRAFT_01278 and H281DRAFT_01279 are separated by 45 nucleotides H281DRAFT_01277: H281DRAFT_01277 - vanillin dehydrogenase, at 113,314 to 114,765 _01277 H281DRAFT_01278: H281DRAFT_01278 - trans-feruloyl-CoA synthase, at 114,886 to 116,775 _01278 H281DRAFT_01279: H281DRAFT_01279 - Nicotinamidase-related amidase, at 116,821 to 117,510 _01279 Position (kb) 114 115 116 117Strain fitness (log2 ratio) -2 -1 0 1at 114.602 kb on + strand, within H281DRAFT_01277at 114.603 kb on - strand, within H281DRAFT_01277at 114.603 kb on - strand, within H281DRAFT_01277at 114.764 kb on - strandat 114.883 kb on + strandat 114.884 kb on - strandat 115.279 kb on + strand, within H281DRAFT_01278at 115.339 kb on - strand, within H281DRAFT_01278at 115.614 kb on - strand, within H281DRAFT_01278at 115.756 kb on + strand, within H281DRAFT_01278at 115.757 kb on - strand, within H281DRAFT_01278at 115.757 kb on - strand, within H281DRAFT_01278at 116.236 kb on + strand, within H281DRAFT_01278at 116.377 kb on - strand, within H281DRAFT_01278at 116.395 kb on + strand, within H281DRAFT_01278at 116.823 kb on - strandat 116.898 kb on - strand, within H281DRAFT_01279at 117.107 kb on + strand, within H281DRAFT_01279at 117.307 kb on - strand, within H281DRAFT_01279at 117.307 kb on - strand, within H281DRAFT_01279at 117.307 kb on - strand, within H281DRAFT_01279at 117.518 kb on + strandat 117.519 kb on - strandat 117.525 kb on + strandat 117.526 kb on - strandat 117.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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114,602 + H281DRAFT_01277 0.89 -0.7
114,603 - H281DRAFT_01277 0.89 +0.1
114,603 - H281DRAFT_01277 0.89 -1.2
114,764 - -1.8
114,883 + +1.3
114,884 - -0.7
115,279 + H281DRAFT_01278 0.21 +1.2
115,339 - H281DRAFT_01278 0.24 -0.3
115,614 - H281DRAFT_01278 0.39 +0.4
115,756 + H281DRAFT_01278 0.46 +0.1
115,757 - H281DRAFT_01278 0.46 +0.4
115,757 - H281DRAFT_01278 0.46 +0.8
116,236 + H281DRAFT_01278 0.71 -1.3
116,377 - H281DRAFT_01278 0.79 +0.6
116,395 + H281DRAFT_01278 0.80 -0.4
116,823 - -0.2
116,898 - H281DRAFT_01279 0.11 +0.6
117,107 + H281DRAFT_01279 0.41 -0.7
117,307 - H281DRAFT_01279 0.70 -1.1
117,307 - H281DRAFT_01279 0.70 +1.6
117,307 - H281DRAFT_01279 0.70 +0.8
117,518 + -0.7
117,519 - -1.8
117,525 + -0.7
117,526 - +0.9
117,526 - +1.0

Or see this region's nucleotide sequence